RNA id: XM_022680562.1


Basic Information

Item Value
RNA id XM_022680562.1
length 3274
RNA type mRNA
GC content 0.46
exon number 10
gene id gabpa
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 31895832 ~ 31904168 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCATAGCTAATAGCTGGCTAGCTCACTAATATTTAAGCTACATTTTACAAGAGTTTTCTTAATAGCTACTTCAGAACCATAATGTGGTTATTTTAGGCTGTTAGAATAGACTTAACTAGTTATTTAGGTAAAGTAGAAATAAGTAACTTAGCTAGTTTGCATAACCTAGGCTAGCTTAGCGTAGCTAGCGTCACATACAGTTACACACAGACACTTTATACAGTACAGAGTTTTCCTAGCAGGCAAACTCTGCTTTTATCAAATTATCAGGCCAGGTTTAGTTAGAACTGTTAACTCCACTCTATTCATTTTAGATTGTGTTAGAACAGGTTAATTTAGATAAAAATAACCTGTAGTtaatataactaaataaatcGCAGTGAAGTGTAACGTTAACGTACCTAGCGCCACACAGTTACATGAGTTTTACTAGCAGGCAAACTCTGCCTTTATCAGGTttattagctaatgttatcaaGTCAGGTTTAGTACTTTAAACTCTAACGTTACTCTAATAATCTAAGACTAAGCTAAATTAAGCTAGTTAGTTATCTAACCTGTATTTTATATGAATAAATCGCAGTGAAGAAGTAAGTCTGTCTGTTTTTGGCTGGGCGAGCTCACAGCCAGCCCACTCACTACTCTAGgtaagctaaagctagctatCCAGGCGTGTCTCCCTGTCTCCCCATGAGCTAACCAAGATAGCTAACAAAGGCCAAGCGCTCAAATAAGCAGTAGTTTTTAGACGACTTAAGCTAAAATATCACTACCTGACACCCCAAAATCAACTCCTAGCCTCACAATCGAGAGATTTCCCCGCCGTCGTCCCGTCCGTTTCTCCAGCCCGTTTTCGGAAGTCTGACAGCGCCGTGACTTTCGCCAGGATTTCCGGCTGCTTTTACATTGCccttctgttgttttgtttccGTTTCTTCCATTTCCGTTTTAAGTTTCCACAATCTAAAGTGTGATGTGTGGCGATCTATTAAAAGTcgtaaaagttttaaaaagtcgCTTCTCGCACCGTTTTTTCCAATCATACCCCGAAACCCTAAACGACTCCCAATATGGCAACTGCGTTTGCTTCTATTCGCGCGTCCTCTtcctagctaacctaactaacgcAGCGACTGTCACCAAAGACTGACAGTAACCGCCGTTTTTTCCAGCTTTCCGACAAAGCAACGTCCAGTTCTGATTAACAAAACCAGCCGTTTTTAGTTCACCCTTTAAAATGTCATGTTTATTTCACACACATGGCAGAGAATCGCAGTGGGCCTACACTCTGCACAAGCCTCGGTGTTGCGTAAGAGTTGCCCGCTTTCGAAGAGCTCTTTTAGCGCCTCGCACTCTCCCCCTCTACCGCCATGTAACTACCGCCACCGACCACAGgttagAAATTTTCTTTCAAGATGTCAAAAAGTGAGACTGAGGAGATGATTGAGATCGAAATTGATGGACATGAGAAACAAGAATGCTTAGAAGAAGGGATAGAGGAGCACATCATTACATCAGCTGAACTAATCACACAGGACATTGATATAAATGAGCCTGTGGGCAACTTAAAGAAGTTATTGGAACCCCGTATACAAATTCCGCTGGATGGATATGATATTTGTCTGCAAGATATTCAGTTGCACCCTGACCACAGCCTTTTTGACCAAGGTGTGAAGACAGATGGTACAGTTCAGCTGAGTGTGCAGATTGTCACCAGACCAGgtGAAGAAAAATTGAATATCCTGGAAATAGTGAAGCCAGTAGAGACAGTCGAGGTGGTGATTGACCCGGATGCAGCTGCAGGAGAGGAAGCACACCTGGTGGAGGATGGGCAGGTGATAGCAGTAGAACGTGCAACAATTGCAGATGAAACCTCAGAACAGGTGACTCGATGGGCAGCTGCACTAGAGGGATACCGGAAGGAGCAGGTCCGATTGAGCATCCCTTATGACCCGGTGCAGTGGACGGCTGATCAGGTGATCCACTGGGCAGTATGGGTGATGAAGGAGTTCAACATTGAGGAGATGGAGGTAGGCGGCATCCACATTCCAGGTCGCCAGCTGTGTGCCTTCAGCCAGGAGGAATTCCTCCAGAGAGTGCCCAATGGAGAGATCCTGTGGAGCCATCTGGAGCTGTTGCGCAAGTATGTTCTGGCGAGTCAGGAACAGGGACAGGAAGCCACAGTCACAATTGACCAAACTGTGCAGATTATCCCTGCCCCTGTGCAGCAGGCCACAACCACAGCCATAAAGGTGCAGAAGCATAACAAAATGCCCAGAGCTCCTCGTATCTCAGGAGAAGAGCGCAGTTCCCCGGGCAACCGCACAGGAAATAATGGACAAATCCAGCTGTGGCAGTtcctgctggagctgctgaCAGATAAGGATGCGAGGGAGTGCATCTCCTGGGTGGGAGAGGAAGGGGAATTCAAACTCAACCAGCCTGAGCTGGTGGCTCAGAAATGGGGGCAGCGCAAGAACAAGCCCACCATGAACTACGAGAAGCTCAGCAGAGCCCTCAGATACTACTATGATGGCGACATGATCAGCAAAGTGCAGGGCAAGCGCTTCGTCTACAAATTTGTTTGTGACCTGAGGACTCTGATCGGCTACAGCGCCGCTGAACTGAACAACCTGGTGACGGAGTGCGAGCAGAAGAAACTAGCGCGGGTTCAGCTGCATGGGATCGGCCAGTCCGTCAACACAGTCACCCTGGCGACAGCTGCCGGGCAACCAGTCACCACAGTCACCCTGGCCGCTGCGGCACTGGAGAAGGACAGCTGAGTGGGAGAGGCTGGGTAAAAAGGGGGCATACGAAAAAGGGGAGGGGCAAAGAAAGGGACTTTGGGCATGGCAAATGGGCTTatgagcaggtgtgtgtgtgtgtgtttgtttgtttgtgtgttttaagagCGTGTGACtgtaagtatgtatgtatgtttgcgtgtgtgtgtatatacatgaATGAGTGAATGTTGAGGGACAGTATAGCAGGTCCTGTGAGAGGGAGATGAATGAAACTATCAATGGCCGTGTATGGGCTTTGAGTTTTTGTACGCTTCTTCTCTGACTGCAGGGTAGCTTTGGCTGCATttccattgtatatatattctatgtttTTGATAGCCATGAGGGCAGTGTATTTTGATATTTTCCATTTGTAAAGGATCcgtactttctttcttttttattttgaggtTCCAATTTCCCTCAAGGTGAGGTACTTTTAACTGTCCACCAGGGGGCAATAAAGAGAAAAGTTGATTTTTTGAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09441 GABPA; GA-binding protein transcription factor, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231747 lncRNA downstream 314 31836759 ~ 31895518 (-) True G171209
XR_002651389.1 lncRNA downstream 26360 31868559 ~ 31869472 (-) True LOC111194941
TU231731 lncRNA downstream 179542 31715983 ~ 31716290 (-) True G171195
TU231730 lncRNA downstream 184351 31711109 ~ 31711481 (-) True G171194
TU231729 lncRNA downstream 225066 31670557 ~ 31670766 (-) True G171193
TU231779 lncRNA upstream 52661 31955818 ~ 31956701 (-) True G171230
TU231780 lncRNA upstream 54010 31957167 ~ 31960193 (-) True G171231
TU231783 lncRNA upstream 58124 31961281 ~ 31961574 (-) True G171232
TU231787 lncRNA upstream 63049 31966206 ~ 31967722 (-) True G171236
TU231788 lncRNA upstream 75934 31979091 ~ 31979292 (-) True G171237
XM_007227885.3 mRNA downstream 641425 31244773 ~ 31254407 (-) True LOC103022864
XM_007227887.3 mRNA downstream 652316 31232151 ~ 31243516 (-) False rcan1
XM_022680559.1 mRNA downstream 658551 31232151 ~ 31237281 (-) True rcan1
XM_022680558.1 mRNA downstream 665776 31228210 ~ 31230056 (-) True LOC107197676
XM_022680012.1 mRNA downstream 674501 31214924 ~ 31221331 (-) False mab21l3
XM_022680564.1 mRNA upstream 1112 31904269 ~ 31912403 (-) True LOC103043487
XM_007227873.3 mRNA upstream 29234 31932391 ~ 31942213 (-) True LOC103045951
XM_007227874.3 mRNA upstream 29234 31932391 ~ 31940237 (-) False LOC103045951
XM_007227861.3 mRNA upstream 236416 32139573 ~ 32151799 (-) True LOC103042484
XM_022680571.1 mRNA upstream 366382 32269539 ~ 32296082 (-) True LOC103041458
TU231269 other downstream 3208153 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 3992933 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 5990350 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 6386416 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 7571327 24312583 ~ 24324505 (-) True G169980
TU232121 other upstream 855361 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 1270896 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 1311165 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 3034148 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 3318558 35221715 ~ 35222225 (-) True G172060

Expression Profile