LOC107197676 (LOC108426021)


Basic Information

Item Value
gene id LOC107197676
gene name LOC108426021
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 31228210 ~ 31230056 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680558.1
GTTGGTAGAGCCTTTGTGGAGTTGGTATTGTGAATCTGGCTGACTCATGCACTCTGACATGTGGAATTAAGCTTTACGAAGACTTTACCTAGTGTTCCAGAGCAGCTCCATATCTGTCATCTCTGACTTTTGTGACACTGGAAAATAAAGGATGGAACTATGGCTCGTTGTCTGACCAGTCATGGAGACTATGCAGTGATCAGATCAGTTTTTCCCCTTGAGGAAACGGATGACCTTGACTCTTTTGAGGCTCATTAAATGTGTTGATGTCCTGAGGCTtaatgtgtgtgcgtgtcttaCATGCATGGGTAAAAGCGTGTTTAGGGGTGGAACCGTCATTTTGAagaccattttttttagataaaccACATGAAGCAGACAGACATCTGTTCTCTGTCTCCTACGACACCAATATACCTCTGAATATCCATAAGgctACTATGCGAGTTAGGAACAGTACAGATGTCCAGTCTTACCTGCTCTCGTGGTTCCAGAACTACCTCAATCAAACCTGGAGCTTACCGCCAGATCCTCCTGCCCTTACTACAGCCCACCAACCCCCTGTCCCCTTCAGTGCAGTGCAACTCAAAGGCCAAAGCCAAGGAATGATCTACATTCTTCTGATAGTGGGCTTTTTCAGTTTCTTCACCTTTGGCATCATGTTCAGCTACATCCGTTCCAAAAAGCTGGAGAACTCACAGGATCCTTACCACCAGTACATCGCTCGAGACTGGGCCAGTGTGTTGTCACCCCCCTCTGCAGCTATCAGACAGGCTCTCAGAGCCAAGAAGGAGCCTGTGGTTATCGGAAACCCAGCTGCTCTGGAGCACCTATCCGGGTGAGGGTCCAGAAAACTGCCGGAGATGACAGAGTGCACACTTTAATCAAATATGAACAGCATTTTATCTGTAATTGCACTTTTAACCATTGGTAAAAATGAATCAAGTCCTTCAGATTACTTCATAAAATGCATTTGCTGCAAAG

Function

NR:

description
PREDICTED: potassium voltage-gated channel subfamily E member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680558.1 True 984 mRNA 0.46 2 31228210 31230056

Neighbor

gene id symbol gene type direction distance location
mab21l3 mab21l3,LOC107597583,LOC107673652,LOC107756750,LOC107656782,LOC107748187 coding downstream 5705 31214220 ~ 31222505 (-)
LOC103024756 atp1a1,atp1a1b,LOC107656784,LOC107756749,LOC107569141 coding downstream 30249 31179433 ~ 31197961 (-)
lrp1b lrp1b,LOC107660661,LOC107661145,LOC107746259 coding downstream 169962 30550239 ~ 31058248 (-)
LOC103025591 NA coding downstream 834241 30384602 ~ 30393969 (-)
LOC103026097 inhbb,LOC103026097,LOC107597480,LOC107722876 coding downstream 846442 30372072 ~ 30381768 (-)
rcan1 rcan1,rcan1a,LOC108266951,LOC107748124,LOC107656781,LOC107597484,LOC107673717,LOC107756752 coding upstream 2095 31232151 ~ 31243516 (-)
LOC103022864 si:dkey-67c22.2,LOC107569142,LOC107748125,LOC107673696,LOC107656780,LOC108426078,LOC107756753 coding upstream 14717 31244773 ~ 31254407 (-)
LOC103043487 jam2b,LOC108426074,LOC107577316 coding upstream 674213 31904269 ~ 31912403 (-)
LOC103045951 tfdp1,tfdp1a,LOC108426071,LOC108266453,LOC107595816,LOC107748134,LOC107597491,LOC107756763,LOC107673714 coding upstream 702335 31932391 ~ 31942213 (-)
LOC103042484 shox,LOC107597497,LOC107748138,LOC107673655,LOC107695485 coding upstream 909517 32139573 ~ 32151799 (-)
G171082 NA non-coding downstream 602851 30613683 ~ 30625359 (-)
G171037 NA non-coding downstream 684254 30543565 ~ 30543956 (-)
G171036 NA non-coding downstream 706380 30521412 ~ 30521830 (-)
G171028 ralb,ralba,LOC105901921,LOC102232228,LOC107746258 non-coding downstream 810584 30394953 ~ 30417626 (-)
LOC111194938 NA non-coding downstream 1089812 30136857 ~ 30138398 (-)
G171187 NA non-coding upstream 238618 31468674 ~ 31468905 (-)
G171191 NA non-coding upstream 309510 31539566 ~ 31539794 (-)
G171193 NA non-coding upstream 440501 31670557 ~ 31670766 (-)
G171194 NA non-coding upstream 481053 31711109 ~ 31711481 (-)
G171195 NA non-coding upstream 485927 31715983 ~ 31716290 (-)
G170854 NA other downstream 2540531 28686050 ~ 28687679 (-)
LOC111194963 NA other downstream 3325311 27900191 ~ 27902899 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 4975944 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 5322594 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 5718794 25501940 ~ 25509416 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 665776 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 1528451 32758507 ~ 32776018 (-)
G171553 NA other upstream 1943997 33174053 ~ 33176284 (-)
LOC103028031 LOC108426040 other upstream 1984266 33214322 ~ 33235878 (-)
LOC103024438 LOC108426008 other upstream 2077937 33307993 ~ 33318351 (-)

Expression


Co-expression Network