LOC111194938


Basic Information

Item Value
gene id LOC111194938
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 30136857 ~ 30138398 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651387.1
AGCGGcggtctgcgcatgcgcgaatttTTAGCGGCGATCTGCCGCTTCATTTGAAGCTGTTCTGGCTGCTCGCGTCCGGTTTCTGGCTTGGGATGTGGCTGTGCGCTTGGGCGCGTGCAATTCCACAGACGCTGAAACTGGATTTTATAAAGATATGAGAAACGAATGCTTTCGTCGTGGGTTTGACATGAAAAGGTACTTCTAAGGCAGCTAGTCAAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGAATGATGTTCAGAAACCACGCCTTCATCTTCTGTTCTTCTGGTATGGGTTTTCAGTGAACAGTACAGGCAGAGAACTGTCTTCTTTGTAGAAGCTACCATTACAGCATCCAGGCACACCCtttatatttctaataaagtgtcaaaTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651387.1 True 445 lncRNA 0.47 2 30136857 30138398

Neighbor

gene id symbol gene type direction distance location
LOC103030131 LOC108266238,LOC107741933,LOC106586425,LOC103360348,LOC101468032 coding downstream 86453 30040853 ~ 30050404 (-)
hacd2 hacd2,LOC107660639,LOC107741899,LOC107661144 coding downstream 160933 29963117 ~ 29975924 (-)
adcy5 adcy5,LOC107660638,LOC107555914,LOC107661140,LOC107596066 coding downstream 175602 29842549 ~ 29961255 (-)
sema5b sema5b,sema5ba,LOC108261041,LOC107661137,LOC107660660 coding downstream 398406 29528377 ~ 29738451 (-)
hspbap1 hspbap1 coding downstream 705355 29410890 ~ 29431502 (-)
LOC111194939 NA coding upstream 4057 30142455 ~ 30149121 (-)
gli2 gli2,LOC107597558 coding upstream 22538 30160936 ~ 30259332 (-)
LOC103026097 inhbb,LOC103026097,LOC107597480,LOC107722876 coding upstream 233674 30372072 ~ 30381768 (-)
LOC103025591 NA coding upstream 246204 30384602 ~ 30393969 (-)
lrp1b lrp1b,LOC107660661,LOC107661145,LOC107746259 coding upstream 411841 30550239 ~ 31058248 (-)
G170986 clasp1,clasp1a non-coding downstream 4708 30128123 ~ 30132149 (-)
G170985 NA non-coding downstream 13448 30121812 ~ 30123409 (-)
G170970 NA non-coding downstream 34662 30081098 ~ 30102195 (-)
G170952 NA non-coding downstream 66375 29934043 ~ 30070482 (-)
G170967 nifk non-coding downstream 81350 30051590 ~ 30055507 (-)
G171028 ralb,ralba,LOC105901921,LOC102232228,LOC107746258 non-coding upstream 256555 30394953 ~ 30417626 (-)
G171036 NA non-coding upstream 383014 30521412 ~ 30521830 (-)
G171037 NA non-coding upstream 405167 30543565 ~ 30543956 (-)
G171082 NA non-coding upstream 475285 30613683 ~ 30625359 (-)
G171187 NA non-coding upstream 1330276 31468674 ~ 31468905 (-)
G170854 NA other downstream 1449178 28686050 ~ 28687679 (-)
LOC111194963 NA other downstream 2233958 27900191 ~ 27902899 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 3884591 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 4231241 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 4627441 25501940 ~ 25509416 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 1757434 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 2620109 32758507 ~ 32776018 (-)
G171553 NA other upstream 3035655 33174053 ~ 33176284 (-)
LOC103028031 LOC108426040 other upstream 3075924 33214322 ~ 33235878 (-)
LOC103024438 LOC108426008 other upstream 3169595 33307993 ~ 33318351 (-)

Expression


Co-expression Network