G171187


Basic Information

Item Value
gene id G171187
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 31468674 ~ 31468905 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU231723
cctccacagtcaccggacctgaacccaatccagatggtttggggtgagctggagcacagagtgaagaaggcaaaggggcaacaagtgctaataaacacctctgggaactccttccttcaagactgttggaaaaccatttcaggtgaccacctcttgaagctctttgagagaatgatgccaagagtgtgcaaagcagtaatcagagcaaagggtggctattttgaagaaacta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU231723 True 232 lncRNA 0.48 1 31468674 31468905

Neighbor

gene id symbol gene type direction distance location
LOC103022864 si:dkey-67c22.2,LOC107569142,LOC107748125,LOC107673696,LOC107656780,LOC108426078,LOC107756753 coding downstream 214267 31244773 ~ 31254407 (-)
rcan1 rcan1,rcan1a,LOC108266951,LOC107748124,LOC107656781,LOC107597484,LOC107673717,LOC107756752 coding downstream 225158 31232151 ~ 31243516 (-)
LOC107197676 LOC108426021 coding downstream 238618 31228210 ~ 31230056 (-)
mab21l3 mab21l3,LOC107597583,LOC107673652,LOC107756750,LOC107656782,LOC107748187 coding downstream 246169 31214220 ~ 31222505 (-)
LOC103024756 atp1a1,atp1a1b,LOC107656784,LOC107756749,LOC107569141 coding downstream 270713 31179433 ~ 31197961 (-)
LOC103043487 jam2b,LOC108426074,LOC107577316 coding upstream 435364 31904269 ~ 31912403 (-)
LOC103045951 tfdp1,tfdp1a,LOC108426071,LOC108266453,LOC107595816,LOC107748134,LOC107597491,LOC107756763,LOC107673714 coding upstream 463486 31932391 ~ 31942213 (-)
LOC103042484 shox,LOC107597497,LOC107748138,LOC107673655,LOC107695485 coding upstream 670668 32139573 ~ 32151799 (-)
LOC103041458 LOC108426064,LOC108266307 coding upstream 800634 32269539 ~ 32297518 (-)
LOC103041148 LOC108426017 coding upstream 830462 32299367 ~ 32303297 (-)
G171082 NA non-coding downstream 843315 30613683 ~ 30625359 (-)
G171037 NA non-coding downstream 924718 30543565 ~ 30543956 (-)
G171036 NA non-coding downstream 946844 30521412 ~ 30521830 (-)
G171028 ralb,ralba,LOC105901921,LOC102232228,LOC107746258 non-coding downstream 1051048 30394953 ~ 30417626 (-)
LOC111194938 NA non-coding downstream 1330276 30136857 ~ 30138398 (-)
G171191 NA non-coding upstream 70661 31539566 ~ 31539794 (-)
G171193 NA non-coding upstream 201652 31670557 ~ 31670766 (-)
G171194 NA non-coding upstream 242204 31711109 ~ 31711481 (-)
G171195 NA non-coding upstream 247078 31715983 ~ 31716290 (-)
G171209 NA non-coding upstream 367854 31836759 ~ 31895518 (-)
G170854 NA other downstream 2780995 28686050 ~ 28687679 (-)
LOC111194963 NA other downstream 3565775 27900191 ~ 27902899 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 5216408 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 5563058 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 5959258 25501940 ~ 25509416 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 426927 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 1289602 32758507 ~ 32776018 (-)
G171553 NA other upstream 1705148 33174053 ~ 33176284 (-)
LOC103028031 LOC108426040 other upstream 1745417 33214322 ~ 33235878 (-)
LOC103024438 LOC108426008 other upstream 1839088 33307993 ~ 33318351 (-)

Expression


Co-expression Network