G171082


Basic Information

Item Value
gene id G171082
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 30613683 ~ 30625359 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU231589
CTCTTCAACTAAAGGTgtatctgtctccctctctgtcttccTCTATTGATTTCTCTGTCATGTAACACTTTCTCCATGACAGCCTGCGTGTAATTCTAGATGTTTATTTCCGATCGGGCTGTTTTCAGTCCACAGATTGTCACAGTGCTATTGCAGCACACCAGTGCGATTGTGATGGTACATAACAATATTACGTCAGTGCTCCTTTTAAATCACCTTTTAAATTGTGTAAAGATATGATGACAAACaaatcaatgaaaaaaatgatccagaatgaccTGAAaggaaactctctctcttttacattaACTTTCTTTACAAGATAAATCCTCGGTGAGAAGAGACAATTAAGttattatacatataataaaacaaatacactgCCACAATAGATTCCACACtcttttacacaaacacaaatgctTACAGTGGCttaaaaaagtattcatactccttgaacttttttacgtacatttatttactaatttaattgagattttaagtgatagaccaacacacagtaacacgtaattgtgaagtggaatgaaaatggtGCATGTTTTTCAGCCCCCTATAGCAATACTTAGTACAGCCACCTGTCGCTGCATTTAcggctgcaagtcttttgggctttgtctctaccagctttgcacatctagagatTTTTGCCTAATTtgtctttataaaacagctcaagtaGTTTTATAGTCTTGTCACAGAATCCTATTGGGATTTAGGTCAGCTAAGACTATGACTGGGCCATTCCAACaaatgaatattctttgatctaaactattccactgtagctctgtggCTGTAtctttagggtcatcgtcttgccggAAGGTAAAAAGGTTCTTGTTCAAGCCAATGTATGCTCCTGTGGTGGTTGATACTCTTAGTAATCACAGGGTGGATATAGGACAAATCCTAGGATCTGTAAAATGTCAGGCTAGAGTTAAATATGTCGGCAGTAGAGGAGTCTGTGCTGCTTTTCCTTTGGTATAggcaaaaactgaataaaaggaATGGGCTTGATTCATTAAAACTTGTTCACCATGacagttctctttttcttcttcttcttcttcttcttcttcttgatgAACTTATAACACTACAGCACTGCACAGGATGTCAGCAGTtcatgtattttactgtattattgtaGATGATGTGAGTTTATTAAGAGAAATGTAGTCATTATTCTTTCTGATCTATTATAAACTGTGAAATAGCTGTCTTAATTAGAAGTCATTTTattgtaactgtaaaaaaaaaatactgcttttACTGTTTTGGTTGATGGAGTGTTATTTTCTTAGCTGGTGTCTTCTTTTGACAGTCTTTTAGAAGCTCTCTTTTCACTCTGGCTGTAGTTTTATGATGTTGAAACCCATTAGCCAGCGTTTAAATAGAGTAATCTGTCTGAGGGTCTTGAGAAGACGCTCTCACTTTTTTCCCCTTAACAGTACTGAGAGTGCTACAGAGATCTTGCATCCAGGGGAAGAAAAGAAagcagcttttttatttttttttgtttttttgtgctgttaGCTCTTTATAAGTACAGTCTATAGTCTACTACCGGGCCTAGAACTGAATATgaaactgaattttttttttttttcttcttctctttagcTTGGTGTAAATTGATCTCTGCTCTGCTTTAAGTGTGTTctgatataaaagaaaaaaaaagctgaatatatatattttatacatattcatatacagccttggaaaaaataagattttactatttataggtatatgtttgagtcaaattaacttttttttattctttagactacagacaacatttctcccaaatttcaattagaaatattgtcatttagaaaattttcatttgcagaaaatacatgagaaatgatcaaaataaagaaaaagatgcagagcttttaggtctcaaataatgcaaaaaaaaaaaagttcatattcataaagttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU231589 True 1974 lncRNA 0.34 3 30613683 30625359

Neighbor

gene id symbol gene type direction distance location
LOC103025591 NA coding downstream 219714 30384602 ~ 30393969 (-)
LOC103026097 inhbb,LOC103026097,LOC107597480,LOC107722876 coding downstream 231915 30372072 ~ 30381768 (-)
gli2 gli2,LOC107597558 coding downstream 354351 30160936 ~ 30259332 (-)
LOC111194939 NA coding downstream 464562 30142455 ~ 30149121 (-)
LOC103030131 LOC108266238,LOC107741933,LOC106586425,LOC103360348,LOC101468032 coding downstream 563279 30040853 ~ 30050404 (-)
LOC103024756 atp1a1,atp1a1b,LOC107656784,LOC107756749,LOC107569141 coding upstream 554074 31179433 ~ 31197961 (-)
mab21l3 mab21l3,LOC107597583,LOC107673652,LOC107756750,LOC107656782,LOC107748187 coding upstream 588861 31214220 ~ 31222505 (-)
LOC107197676 LOC108426021 coding upstream 602851 31228210 ~ 31230056 (-)
rcan1 rcan1,rcan1a,LOC108266951,LOC107748124,LOC107656781,LOC107597484,LOC107673717,LOC107756752 coding upstream 606792 31232151 ~ 31243516 (-)
LOC103022864 si:dkey-67c22.2,LOC107569142,LOC107748125,LOC107673696,LOC107656780,LOC108426078,LOC107756753 coding upstream 619414 31244773 ~ 31254407 (-)
G171037 NA non-coding downstream 69727 30543565 ~ 30543956 (-)
G171036 NA non-coding downstream 91853 30521412 ~ 30521830 (-)
G171028 ralb,ralba,LOC105901921,LOC102232228,LOC107746258 non-coding downstream 196057 30394953 ~ 30417626 (-)
LOC111194938 NA non-coding downstream 475285 30136857 ~ 30138398 (-)
G170986 clasp1,clasp1a non-coding downstream 481534 30128123 ~ 30132149 (-)
G171187 NA non-coding upstream 843315 31468674 ~ 31468905 (-)
G171191 NA non-coding upstream 914207 31539566 ~ 31539794 (-)
G171193 NA non-coding upstream 1045198 31670557 ~ 31670766 (-)
G171194 NA non-coding upstream 1085750 31711109 ~ 31711481 (-)
G171195 NA non-coding upstream 1090624 31715983 ~ 31716290 (-)
G170854 NA other downstream 1926004 28686050 ~ 28687679 (-)
LOC111194963 NA other downstream 2710784 27900191 ~ 27902899 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 4361417 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 4708067 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 5104267 25501940 ~ 25509416 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 1270473 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 2133148 32758507 ~ 32776018 (-)
G171553 NA other upstream 2548694 33174053 ~ 33176284 (-)
LOC103028031 LOC108426040 other upstream 2588963 33214322 ~ 33235878 (-)
LOC103024438 LOC108426008 other upstream 2682634 33307993 ~ 33318351 (-)

Expression


Co-expression Network