RNA id: TU232130


Basic Information

Item Value
RNA id TU232130
length 3436
lncRNA type inter_gene
GC content 0.45
exon number 5
gene id G171479
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 32805637 ~ 32811201 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGTCACTGGTTAGCTGCGGGTGTAACTTTACAGACCGCGATCTCAGTTCACAATTATGCAGCCACACATCTTATAAAATCTCCTGCTCCTAACCAAATATCCAGCACAACAAACCCAGCTTTAAACCCAAACCATCGATgtataaacagagacagaggagaagttttctttcagtgttttctgacagaaactgtaaggattaaaaaaaaacaagagtgtGTCTTTTTCACTCGTTCTTTAACGCTAACTTGCACGTACAGTGGATTCACGCGGTTAGTGCAAAATGCAGTGAATGCTGCGTCTCGCGCCTCGTGTTTGGCATAACAAACGCTAGCTATGTAAGTTAGTTGTCTACCGGAGTTAGGTTAAGTGCCCGCACAGATCAGAACACAACATAACATCAGCTTACCTTTTCATGTCAAATCCACGACGAAAGCTTTTATAAAATCCAGTTTCAGCGTCTATGGAATTGCACGCGCCCAAGTGCACAGCCACATCCCAAGCCAGAAGCCGGACACGAGCTGCCAAAACAGTTGTACTTCAAATGAAGCGGCAGATcgCCGCTAATTTTGTCGGcgatctgcgcatgcgcgaaatttaaaaattcgcgcatgcgcagattACCGCTAATTTTGTCGGcgatctgcgcatgcgcgaaatttaaaaattcgcgcatgcgcagattGCCGCTAATTTTGCCGGcgatctgcgcatgcgcgaaatttaaaaattcgcgcatgcgcagattACCGCTAATTTTGTCGGcgatctgcgcatgcgcgaaatttaaaaattcgcgcatgcgcagatcgccgctctgcgcatgcgcgaaatttaaaAATTCGCAAGCGCAGCTtacccctctttttttttttcgtcttttGGGAACACACCGCTAAAATTAATTTAGtgtaaattaactaaaaaaggGTTTTGGTAAAAAGCCAGTTGACTTTTTAACATTAGCCAGATTTACCATACTTTAgtcttaaaatactttaatttcatACTTTAATAAGATACAGAAGTTAAACATCTACAAAAACGCTGCCGGATTAGACCGGAGTACCGAGAGGAGCTTTTTTAGTCCTGTTAGGTTTAACTACCGTTAGCTAACTGGCTCTTTCAGCTCTCAGTGAAACGAGAAGCTCGTGAATCAGCTCTTAAACAGCGCTGGGTGTATTGTTTCTGAACGAGCAGGTGCTGCTGCAGGTATAACGCTgtaagatagctaacgttagcgagCTAGCGAGTCGATtgagctaactgtagctaattagcttagccaGCCATTCTCCACTCGCTAGCTCGCTAACGTAAGCTATCTTACAGCGTTATTCGCCATTAACACGCTTTAAATAGTCTTACCACGCGGTAACTTAGTATCATAATAAGACTGAACTACAGCGTGGTGTAAAAGCTGCTGAttgaggaagaagaaaaaaaacaccctatGCTGGGAGCGAAGCTCTTAAACAGCGCTGGGTGTTTTGTTTATGAACGAGCAGGTACTGCTGCAGGTAATcgagctaactgtagctaattagcttagccaGCCATCCTCCATTCGCTAGctcgctaacgttagctatcttacAGCGTTATTCGCAATTAACACGCTTTAAAATAGTCTTACCACGCGGTAGCTTAGTATCATAAAACCGCGTTTCACCGAGAGCTGAAACAGTCAGCTAACTAAATTACTCACCGGGACTAAAAGAGCTCCTCCGCGCTACTCTACAGCAGGGTAATCACTACTGGTGCTGTAGGCCCACCGCTCCGCCTGTTTTAGTGCCGCTGTTTTAAGACTGAGGGGCTTTTAATAAAACCAGAGTAAAGGGGAAACACAGTAAAAAGCAGCGCAGCGGACCTTCAGCACCAGAGTGAAGAAATATTGGATTATTTCGCCCAATATGAATAACTGTTCCCCATAAATCACAGCGAGACTTTAGACTCCCTGCAGACTCCATGCAGCTCCCGGGAAAAAGGGCGTCTATCTTGTTGTTACCGATAGACCTCTTTCACGCAAGGAGGAGGGGTCAAGTTCCGGGCGAGGTGATGTGTAAGCGTATTTCCGGTTTGCAGCACCGCTAGGAAAATGGATGGCTTTTATTATTCCTCGTCTTTGGCTGAACTTCCCCGCTTTAGGCAGGATGATGTGACCAGAACTGTCGAGGAGCTGTCGAGGACCAAACGAGCCAAACTCGATAAAGGATACAAGTTCTTTTTCGagcaatttatttttgattatgaAGGTAAATGGATGCAGTTCTGTAGTTTAGGTTAGCCAAGTTAACTAGCCTGCCTAGCTAGCTTCTTAGCTCGGTGCTCACTTAACATTCTATCATTTAAGCCTTTATCAAACTGTTTGTTAATTCTATTGTTAAATAAAGCATATAGTGTACTGTTATAAGTGCCTGTCTTATGATATTGTGTGTTTAGTGTCCAATGTTGTAGAGAAGGAGATCCGTGTTAGGGCTCGGTGCTACCGGTCCTTAAAGAAAAGCGAGGAACCACACAAGCTAGAGGTCCAAGCTCACGGTTCAGCTATCTCACGGTTCAGCTATCTCACGGTTCAGCTATCTCACGGTTACAGCACTGCAGTTCGCTAAACCATCTTAACTTCCCCAAATAGATTTACTAGTTATTATTAGAGTCTGATACCCTGTTGAGTTTTATGGACTCTGCCAACACATATAAAATGGAccgtagctagctagctacaagCTTCTGTCTATTTTAGACAGAACAGCTGTTATCATGCTAGCTGAATCAGACTTtacatgcatgtttttttcctgataacactgtacttctttagtttatcttgtttaaagtacaatgttttatagagcagtgttactagcttgctagctaggtAGTTAGCTACTCGCCGGGAGTCGGCCGAGTCACGTAGTCGTGGTCCCGCACAGCCGCGCTCCCGTCTCCCTCTTCTTCCAGCACACCGACAGCCTGCTCCCCTATCGCGCCCTCCTCGTCCAAACGAGCAGAATCTCCGAGACGGGAATTCACTCTGCTGTACACAGACTGCCTGGCTGGCCGAGTCCAGCTAAAACGACGCGGTATCGCACCTTTCTTCAGCCACGTCTTGCCCTTTGGTGTAACGTAGATGTCCTGCGGCTCAAAATGAGCGCTACACACATGCGTGCTGTTCCTAAGAATTTTGAAATTCGGCCCCTCACTCCTTCTAATGGCTATCACCCACTTCTTTCTGAGTTCCTCCTCAGCTGGAAATGAGTGGAAACTCAAATAAGGCTGTTTTTGCTTGGAATTAGAGCACAGTGGTACGCTGCAAAAACACTTACTACTCACTTGCGCCATGGCGGAAGAACGAACGCTCCAAACGGAACTGAGTTTACACAGAAATGTCTAGACCGGAAATGTCGACCCCGGAAGCGAGAGAAAGGCCTATCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232111 lncRNA downstream 102781 32696106 ~ 32702856 (-) True G171461
XR_002651311.1 lncRNA downstream 121989 32682328 ~ 32683648 (-) True LOC111194865
TU232113 lncRNA downstream 126661 32678654 ~ 32678976 (-) True G171463
TU231843 lncRNA downstream 561204 32240638 ~ 32244433 (-) True G171280
TU231788 lncRNA downstream 826345 31979091 ~ 31979292 (-) True G171237
TU232149 lncRNA upstream 102717 32913918 ~ 32931640 (-) False LOC111194944
XR_002651392.1 lncRNA upstream 102906 32914107 ~ 32932234 (-) True LOC111194944
TU232179 lncRNA upstream 149403 32960604 ~ 32965237 (-) True G171523
TU232182 lncRNA upstream 211878 33023079 ~ 33099931 (-) True G171525
TU232213 lncRNA upstream 316285 33127486 ~ 33128622 (-) True G171546
XM_007227821.3 mRNA downstream 1743 32799174 ~ 32803894 (-) True fundc1
XM_015604852.2 mRNA downstream 7511 32782380 ~ 32798126 (-) True efhc2
XM_015604876.2 mRNA downstream 7511 32784283 ~ 32798126 (-) False efhc2
XM_007227822.3 mRNA downstream 7512 32782380 ~ 32798125 (-) False efhc2
XM_022680592.1 mRNA downstream 29619 32758507 ~ 32776018 (-) False ndp
XM_022680594.1 mRNA upstream 60917 32872118 ~ 32878667 (-) True c19hxorf36
XM_022680596.1 mRNA upstream 289733 33100934 ~ 33107739 (-) True slc35a5
XM_007227817.3 mRNA upstream 326606 33137807 ~ 33169651 (-) False dcaf6
XM_022680598.1 mRNA upstream 326606 33137807 ~ 33169651 (-) False dcaf6
XM_007227815.3 mRNA upstream 326606 33137807 ~ 33169651 (-) False dcaf6
TU232121 other downstream 33505 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 902110 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4117958 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 4902738 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 6900155 25896595 ~ 25905482 (-) False LOC103030841
TU232221 other upstream 362852 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 403121 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 2126104 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 2410514 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 2559242 35370443 ~ 35371387 (-) False olig2

Expression Profile