RNA id: XM_022680596.1


Basic Information

Item Value
RNA id XM_022680596.1
length 2309
RNA type mRNA
GC content 0.45
exon number 7
gene id slc35a5
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33100934 ~ 33107739 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGCGATGACGCCGGATTCACCGTGCGCGTGCGCAGTAGCGTCGGCGTGAAATTGGGAAGAGTGGAGAGCAGCTGATTGACAGCTACAGAAACACCTCTTCAGAATGGCTcctccatcctcctcctcctcttcctcacgctgctgttgctgctgtccaCGCTCCTGGCTGTGCTCGCGTTCCTCGGCCTACACCTTGGCTCTGGGCTTGGGCTTTATTACACTGGGGACCAGTCGAATCATCCTGCTCAAACTCTCTGAAAATGAAGAGAATAAGTATGATTTTCTCCCTGCCTCTGTGAATTTAATGGCAGAGGCTGTCAAGCTTGCCTTCTGTTTAGTGATGTCACTGCGAGTGATTATTCGAGAGGGACGCTCATATAAAGACTTATGTTGCTCCTCTGGTTCCTCTGTTGGTAGCTGTCTAAAGTGGGCTGTCCCTGCATTCCTGTATTTCCTTGACAACCTCATTATTTTCTATGTGTTGACCTATCTACAGCCTGCCATGGCAGTATTGTTCTCCAACGTTGTTATTCTTACCACAGCCATTCTATTTCGGATTGTTCTGAAGAGGCGATTGTCCTGGGTGCAGTGGGCTTCCCTAatcatcctcttcctctccaTAGTGGCACTAACCACAAGCACACCCAGTAACCAACATACCAACACCTCACACATCCTACACCCGGCACACCTCTCCACTCCCTCCAGCGGCTGCCTCAACTTCACCCGCTCGGAGACGCAACAGCACAACCTCAGCAACTCCAGCTGGGTGGAGGGTCTTCCAAAACAGCTGCGGGACAGTCAGATTCTCCAGCGTCTGCACAGCTTTGGCCTGGGCtacgtgctgctgctgctccagtgCTTCATCTCACCAATGGCCAACATCTACAACGAGAAGATCTTTAAGGATGGCGAGCAGCTGGCTGAGAGCATCTTCATCCAGAACAGCAAGCTGTACGCCTTTGGCCTGGCCTTCAACAGCCTCACGCTGCTCCTGCACCCTGACTCTCGGGAGCTCGTGCTGCACTGTGGCCTGCTGCACGGGCACAATACCTTTTCTGTGGTGCTGGTCTTCGTCACCGCAGCCTTTGGCCTCTCCGTGGCCTTCATCCTTAAGTTTCGCGACAACATGTTCCATGTGCTGACGGGCCAGATCACCACCGTGATCATCACAgcactttcactctttctctttgacTTCCGTCCCTCGTTGGACTTCTTTCTTCAGGCTCCTGCGGTGTTGCTGGCCATTTTTATCTACCACAGCAGCAAGCCAAAGGACGTGGAGTACGCTCTGCAGCAGGCGCGGCTCAGGGTCATCAACGGAGAGGTGTTCGAGAGGTCAAGAGggacgggggaggagctgcagagactAACCAAGTCCAACACAGACAGTGATTCTGAAGAAGAGTCTTTCTGAGTCTTTATAAACCACTCGCCATCCAGCCTTCACCTGCTGTGGCTTTACTGTAATTATCCTGTAAATGATCTGTTAATGTGCCTGTATTTATAATGCTGTAATTATAaagcttattttatatatttaaggtgtatatatataatgagaTATCAGACTTATCAGAAATGTCAATGATTAATGTAACTAGGTGTTTACTACTGAGCAGAATTAAGCATATTATTAGATTAAACAGGAAGTCTGAAATTGACAATGGTCTGCAGGCTGTCTTGCACTGTTGTCAAAAGTGCATATCACATTCTAATGGTTCTTTTGTACATCCGCTCCATTCCTATTACCATTAACGACCACTACTGACCaattatataacagtgtactTGATTTACTGCAGTAATTGTTTTACTGTAAAGGAAGATGACAAAGGGGGAGCAAAGATGAATATATCAAAAGTATTGAATATATCTaaatccttttcttttctcttcataATTTAAGTATTCTGACTGTATTGTCTCTTGTGCCattgcatttctcattttgggCCAAACTACATTTTAGAAATGAGtatgcatttcattttttttcatatcaggTAAATTACAGGATTGTTGTGGTGATGCTGTACTGTTTGCAGAGGATAACctgaaataatcaaataaatcaaccaaaaaataaattacgGAATAAATCTCTCATGAGAAACATAATTTATTATGCGTTAGTAGTTGTGAGTTGTAAGAACTTTTGAAATGATAGTATAATATGTAGTACAAATAGAACAAATCAGGAGTTGTGCACTTATGCTGACATGCAggattttttatatgtatatatctgccAAATGTTATACTGGTGCTGCTatgtaaacatttattaaatgtagAAATACGG

Function

GO:

id name namespace
GO:0008643 carbohydrate transport biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005351 carbohydrate molecular_function

KEGG:

id description
K15274 SLC35A5; solute carrier family 35 (probable UDP-sugar transporter), member A5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232182 lncRNA downstream 1003 33023079 ~ 33099931 (-) True G171525
TU232179 lncRNA downstream 135697 32960604 ~ 32965237 (-) True G171523
XR_002651392.1 lncRNA downstream 168700 32914107 ~ 32932234 (-) True LOC111194944
TU232149 lncRNA downstream 169294 32913918 ~ 32931640 (-) False LOC111194944
TU232130 lncRNA downstream 289733 32805637 ~ 32811201 (-) True G171479
TU232213 lncRNA upstream 19747 33127486 ~ 33128622 (-) True G171546
TU232223 lncRNA upstream 70180 33177919 ~ 33178325 (-) True G171554
TU232224 lncRNA upstream 71644 33179383 ~ 33179849 (-) True G171555
TU232239 lncRNA upstream 195428 33303167 ~ 33305460 (-) True G171569
TU232241 lncRNA upstream 200254 33307993 ~ 33310962 (-) False LOC103024438
XM_022680594.1 mRNA downstream 222267 32872118 ~ 32878667 (-) True c19hxorf36
XM_007227821.3 mRNA downstream 297040 32799174 ~ 32803894 (-) True fundc1
XM_015604852.2 mRNA downstream 302808 32782380 ~ 32798126 (-) True efhc2
XM_015604876.2 mRNA downstream 302808 32784283 ~ 32798126 (-) False efhc2
XM_007227822.3 mRNA downstream 302809 32782380 ~ 32798125 (-) False efhc2
XM_007227817.3 mRNA upstream 30068 33137807 ~ 33169651 (-) False dcaf6
XM_022680598.1 mRNA upstream 30068 33137807 ~ 33169651 (-) False dcaf6
XM_007227815.3 mRNA upstream 30068 33137807 ~ 33169651 (-) False dcaf6
XM_007227814.3 mRNA upstream 30068 33137807 ~ 33169651 (-) True dcaf6
XM_007227819.3 mRNA upstream 30068 33137807 ~ 33169650 (-) False dcaf6
TU232121 other downstream 328802 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 1197407 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4413255 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 5198035 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 7195452 25896595 ~ 25905482 (-) False LOC103030841
TU232221 other upstream 66314 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 106583 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 1829566 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 2113976 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 2262704 35370443 ~ 35371387 (-) False olig2

Expression Profile