RNA id: TU232149


Basic Information

Item Value
RNA id TU232149
length 2012
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id LOC111194944
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 32913918 ~ 32932234 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgaatgggTGTCCTCTGTCTAACCTCTCAATTCTGAGTGCTGaaacaggacactgccctgaaCAGCGATAGGCTGCCAGCGGAGAACGCTCAGCCCCCTCTGAGCTATAAAACCTAGCAAGTCCTGCAGCGTCTAACCGCCtgaccagagagagaaagagagagagggatagagtgAGGGAGCCAGACAGTGtgaatgtaagagagagagagaaaaaggggagggagatagagagaggtagagagggagggagggacaGGCTTTTAAATCCGATGACAGTGTTAACAGTGATAGTCAGCTCCGGCTGAAGCTGCAGAGAGAGGTGTTTGGCTGAAGTGGAGACGGAAACCACCGCCGCTACTGCTGCAGCCTCTACTGCTGCTGTCACTTTAAGACTGTTACTGATTAGACGCCTAAGAATGTGACTGGAaaaacagaaggagagagaaaaaaggggacaaacaaaaagagagacccagagagagacagagagaaaaagagagcgattCAGACCGGCACTCTCCTAGAGGATGCTGGTATCGCTCCTTCGAGCTGGTCtttaattttccagcactgATTTCACACCAGTTCCGGAGCTATGACAACCTGTGaatctgatctctctctctctctctctttctccctctctcactctgtttgcTTGCGGCTTTTCGAAGAGGTTGGACTTGAGGAACTGTCGGAGGAGACCCGGCACATGGACAGGCAACGGCGCTCAGCCATCAGGAAATACTCCTTTCACCCAGACTGAgTTTCGGAATTCATGTTTTACCACTTTCCTCCTTCAACTGCAAGGTCAAATTCTAAGCAATCGGAGGCTCTGGAGTGTCGAGGAGGACAGCAGCAGGACTGCCGCTGTGCCTGGTTTGCCTGTTTGCTCATGAGGTGCTCAGTAGTCAGTGTAGATCCTGTGTTGCAATCAGCAGCTACATCTGGCTACTGGGTCTCTGATGGCATTCAACTTCCTGCTGGCACATTCCTTTCAGATTGTGTGGTATGTTATCACAATGTGGGCTTCATCCTGTGACCACACAGAATGGCGCTCTCTGTGTCGCAGAGGCACTAAAAGGAGGTCCTTGTCAGCGTAGTTTCCCCTGCTCGTACTGCTCGTTCTGCTCGTACTGCTCGTACTTCATTACGATACATCCCCCGTCCCAAAATCCGTAGGTTCCTTCCGTAGACGTCTGACCTCTCTGTGCATCTCTATCAGTGTTTCGTATCTCCGAAATCTATTGTTTCCACAAATAATTTGACATACGTTCTGCCATACGTCCGCATTGTGGAAGCAACCTGAAATTACGGCCGGCTGGTGTTTTGACGCGGCCGCGTTGCCCGATGAATGGATCCAGCCATTGTCGCTGGGCTGACTGTTGAGGATTCAGTTTGAGTGATTTAACGACAAAGGACAAAGGCGAGATGTCGCATTCTCTGTGTGATTAGGCTGTCACAGTGGCTGTGTGTTTGCGCGAATGCCTTCAGCAGCCGCTGACGGCTGAGGAATAATGAACGCGAATCCGACGAGGGCCGCCacgatttttcttttttccccagcGAGCGCGAAGGACGGATTCTTTTGTGCTGTCCTGAACCTGGCATACAATGTAGATTTCTGTGTGGTACAATCTACAGCTACATTGTCTGCTGGGTTTCAGGCCGGCCCAGCATTCCTCCATTCCTTTACCATCTTCGTTTTTCTCTAAAAGCAAATACGTAAGtaataattcgttttttttttttttacagaaaatgtgtacaaataatttgaacacaataataaaagaaagcacTGGAATGCACCAATAGAcatggctgtgtgtgtttctcattACTTGCTTGGCTCAGAGGCGACTGTACAGTGTGGCACTTGCACATTCTATTTGAGTGCACATGATTTCGGTAATGGTGTTTGCAGGGCGGCGAGGTCCATCCAGAGTCCTGACAGACTGTCAGAATTTTTCAAAGGATTAAAACTTGGAAATCCTGGATGTACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232130 lncRNA downstream 102717 32805637 ~ 32811201 (-) True G171479
TU232111 lncRNA downstream 211062 32696106 ~ 32702856 (-) True G171461
XR_002651311.1 lncRNA downstream 230270 32682328 ~ 32683648 (-) True LOC111194865
TU232113 lncRNA downstream 234942 32678654 ~ 32678976 (-) True G171463
TU231843 lncRNA downstream 669485 32240638 ~ 32244433 (-) True G171280
TU232179 lncRNA upstream 28964 32960604 ~ 32965237 (-) True G171523
TU232182 lncRNA upstream 91439 33023079 ~ 33099931 (-) True G171525
TU232213 lncRNA upstream 195846 33127486 ~ 33128622 (-) True G171546
TU232223 lncRNA upstream 246279 33177919 ~ 33178325 (-) True G171554
TU232224 lncRNA upstream 247743 33179383 ~ 33179849 (-) True G171555
XM_022680594.1 mRNA downstream 35251 32872118 ~ 32878667 (-) True c19hxorf36
XM_007227821.3 mRNA downstream 110024 32799174 ~ 32803894 (-) True fundc1
XM_015604852.2 mRNA downstream 115792 32782380 ~ 32798126 (-) True efhc2
XM_015604876.2 mRNA downstream 115792 32784283 ~ 32798126 (-) False efhc2
XM_007227822.3 mRNA downstream 115793 32782380 ~ 32798125 (-) False efhc2
XM_022680596.1 mRNA upstream 169294 33100934 ~ 33107739 (-) True slc35a5
XM_007227817.3 mRNA upstream 206167 33137807 ~ 33169651 (-) False dcaf6
XM_022680598.1 mRNA upstream 206167 33137807 ~ 33169651 (-) False dcaf6
XM_007227815.3 mRNA upstream 206167 33137807 ~ 33169651 (-) False dcaf6
XM_007227814.3 mRNA upstream 206167 33137807 ~ 33169651 (-) True dcaf6
TU232121 other downstream 141786 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 1010391 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4226239 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 5011019 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 7008436 25896595 ~ 25905482 (-) False LOC103030841
TU232221 other upstream 242413 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 282682 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 2005665 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 2290075 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 2438803 35370443 ~ 35371387 (-) False olig2

Expression Profile