RNA id: TU232111


Basic Information

Item Value
RNA id TU232111
length 2454
lncRNA type sense_over
GC content 0.37
exon number 3
gene id G171461
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 32696106 ~ 32702856 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTCCAATCAGCCTACAAAATCTTACATAATCTCTTAAGATATCTCTTCCATTCAGTCCTACAGTGCTATGGTTATGTCATTCGCGCATTTTGACAGGTTGACCTCGGTAATGTGCTGCCCCCTGTGGGCCAGACATTGCTCATTGCCTGctgtgtaattttagatggaTTTAACTCTTGCAGGCAATTTCCTTTCTTGGAAAAGCTAAAGAAAACCTACAGGACAGAAGTACAGAAATAGTGAGACCTCTGTAAGCTGCTGTACACAATGGATGGTGGCTCGTGTGTCACTGAGAATCTTAAGAAATCTTAAGCGAGcgtttgaatgtattttttgtgtttttctttttcagattatgtttgtttttaaccTTAATCATGCGTTTATTTGACATATGTAtatgtcttgttttctttgaccTTTTGTTTATACAACACAGCATTTTTAATTGCCATTTGTTCTTCAAGCACACAGTCATATCAGTTATAGttgaaaatatacatacagtatgtagagAGTATGTAAATGATCATATTGACATACATACAgctgtctttattttttcctaaatcATTCCTAAATCCTTTGCAGAACATTTAAGTTTATTTCTACCCTTCTAACCATGATcacaacacacaacagtgtTCAAGTACACTaacatttccatttatttttttacagcaatcTGTGAGATAAATTTTGGTTTTACAGTTAAAACTACAGCTTTAGGTTCCAGCCAAAGGCAGGAGGTAGCTgccttttttattatgacccaaGAGTCATCCGAAATTTCACCATTTGATTCTCTTACTGTTGgtgttttatctgcttcattGATTACTAAGCCAAGggaatttattcatttgtttaattttcttcacatgatgtttttttttatgtgagcaaatgaaaacaaaaaaatgtgacgaatccttaaaaagttaaaaagaagattagaaaaataacacacTGTATATGTGTGAGCCCAatgtgtgtggaatgtgttgTTGTTCCAAAGATGCGttgtctgtgtgttgtgtgtggtgccTTAAATGTGTTTAGTAGTGTTTCTCATTTCTCAAGTGCCTCTGAGGTTGTCCTGTCCAGCACACTGCTCTTGGATGAGTCTCTGGCTACTTTAGTGAGTGCACTGCTATACACAGCTGTATACATATACAAGCTAAATGCTATAAGCTATAGCAACTAGTGTCTGTTTTGATGGAAGGACTAAAATATATGTgctataatgttattttaagatGCTTTATTCTAAATATATCAAGCAAAATAGTTAGAAAATGATCACTAGTATACTGTTATGGTCCAGTAATTTCTTAAAATGCCATCTGTCTGAAAAATGACATCACTATATAGAACTTTTATTTTCAAGGTTATACAAGTTTTTCAGTAATCAGAAATAGTAAAATCATGTGTAGGTCTGATTCTAACAACTTTTGTAGAGAACTAGCAATGTATTAGAATCTAAACATTGTCTTTTTATCAcatctgaataataataataataataataataataataataataataataatgaagttTACTATTTTCTCATTATGAGCCAAAAGCATGTCTCTCACAGCTAAAGTAGCCTCTGACACACCAGAGAGGATGGATCAGAACCAGAGGGTAAGACAAGCCTGACTGCTGACTGTACCGTTCTGTCAGAAAGCTGACCAACAGTTACCTGTAAAAACTACCTTTTTATAGTatgtttctgttgtgttttataAAAGCTGGTGGACTGTGAACTTAGTAACACTGCAGTGACCCTGTCAGTGCCATCCTAATGTCCTAACATCCTGCTTGATGTCTCTCCTTGGCCTGATGAgtcgtgtgagtgtgtgtctgtgtgtgtgtgtatgtgtgtgtatgtctgagtgtgtgtgtatgtatgtgtgtgtatgtgtgtgtatgtgtgtgtatgtgtgtgtatgtgtgcgctgCTATGATGCTGACATTAGTGCTCACCCCCTAGTGCAGCCCCTGTGCTCTCCGTCCTGATCTTAGTTTATCCTGTCTCCTCTTTCCACCGGTAGTGCAGTAGTTACTGCTAGGCCCTGCTCCTCtgtcctgttctgtgtgtgtgtgtctgtgtgcagtgTCCAGTGTTCTTGTAATTGCGTTACTTGATCCCTTTGTACAAACACAACAACACAGccagaaataaaaatgtgaaatttaccTCCCGCCTGTGTTGCTCTTTTGTTATCAGTGTATGAACAGCCTTCACATCTGAACTGCTGCCCTTTGCTTTGGCACACAAACACCAtttacaaagagagagagagagagagagggagagagagaaaccagaGCACCACACTGCACTAAACCCCACtacatatatcacaatatacatgataaaataaactatatgtAAATCAATGTATTGCTCTTTTTTACATattgtaaatttattttttagctttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651311.1 lncRNA downstream 12458 32682328 ~ 32683648 (-) True LOC111194865
TU232113 lncRNA downstream 17130 32678654 ~ 32678976 (-) True G171463
TU231843 lncRNA downstream 451673 32240638 ~ 32244433 (-) True G171280
TU231788 lncRNA downstream 716814 31979091 ~ 31979292 (-) True G171237
TU231787 lncRNA downstream 728384 31966206 ~ 31967722 (-) True G171236
TU232130 lncRNA upstream 102781 32805637 ~ 32811201 (-) True G171479
TU232149 lncRNA upstream 211062 32913918 ~ 32931640 (-) False LOC111194944
XR_002651392.1 lncRNA upstream 211251 32914107 ~ 32932234 (-) True LOC111194944
TU232179 lncRNA upstream 257748 32960604 ~ 32965237 (-) True G171523
TU232182 lncRNA upstream 320223 33023079 ~ 33099931 (-) True G171525
XM_022680585.1 mRNA downstream 58929 32408907 ~ 32637177 (-) False cask
XM_022680592.1 mRNA upstream 55651 32758507 ~ 32776018 (-) False ndp
XM_007227823.3 mRNA upstream 55651 32758507 ~ 32771966 (-) False ndp
XM_015604852.2 mRNA upstream 79524 32782380 ~ 32798126 (-) True efhc2
XM_007227822.3 mRNA upstream 79524 32782380 ~ 32798125 (-) False efhc2
XM_015604876.2 mRNA upstream 81427 32784283 ~ 32798126 (-) False efhc2
TU231746 other downstream 792579 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4008427 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 4793207 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 6790624 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 7186690 25502135 ~ 25509416 (-) False LOC111194864
TU232121 other upstream 55662 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 471197 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 511466 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 2234449 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 2518859 35221715 ~ 35222225 (-) True G172060

Expression Profile