RNA id: XM_007227824.3


Basic Information

Item Value
RNA id XM_007227824.3
length 1969
RNA type mRNA
GC content 0.52
exon number 15
gene id maob
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 32699967 ~ 32745571 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTTATCGCTGGGTGTAGCTGGTGTTTATCAGTGGGCGTGGTCTGTGCGTGTCCGTTGTCCCTCCTCGTCTTTAACAAGGCGCGAGCGACGCCGGTCCTCAGCaacagcagcggcagcagcagcagcagcaggagcgcGTGCAGCAGTGCGGGCAGTGCGGGCAGGATGGCAGCCAACACGTACGATGTGATCGTGATCGGGGGAGGAATCTCAGGTCTGAGTGCAGCCAAGCTGTTGGTGGAGAGTGGTTTAAACCCTGTACTGCTGGAGGCCAGAGACCGAGTCGGTGGAAGAACCTTCACAGTTCAGAATAAACAGACCAAATGGGTGGACCTAGGCGGAGCTTATATCGGACCCACTCAAAACCGAATCCTGAGGTTGGCCAAGCAGTACGGGGTTCAGACCTACAAGGTGAATGAAGAGGAGTCGCTGGTTCACTATGTGAAGGGGAAATCATATCCATTCAAGGGGCCTTTCCCACCGATGTGGAACCCTCTAGCTCTGATGGACTACAACAACCTCTGGAGGACTATGGACAAGATGGGCATGGAGATCCCTAAAGAAGCTCCATGGAGAGCCCCACATGCTGAGGAGTGGGACAAGATGACCATGCATGAGTTCTTTGACAAGGTTTGCTGGACCAGCGCTGCCCGTCGCTTTGCCACGCTGTTCGTTAACGTGAACGTGACCTCAGAGCCTCATGAAGTGTCAGCTCTCTGGTTCCTCTGGTACGTCAAGCAGTGTGGAGGAACCATGAGGATCTTCTCCACCACTAATGGTGGCCAGGAGCGTAAGTTTGTTGGAGGCTCGAGTCAGATCAGCGAGTGCATGGCCAGAGAGCTGGGAGACCGGGTGAAGCTGCAGAGTGCCGTCTACAGTATTGACCAGACCGGAGATATGGTAGTGGTCAAAACTGTAAATGACGAGATCTACAAGGCCAAATATGTGATCCTCGCCATACCACCAGGACTGAACCTGAAGATTCACTTTAACCCTGAACTTCCTCCACTTAGAAATCAACTGATCCACAGAGTACCCATGGGCTCGGTCATTAAGTGCATGGTCTACTACCGGGAGAACTTCTGGAGGAAGAAGGGCTATTGTGGAAGCATGGTGATTGAGGAAGAGGATGCACCTATTGGTCTGACTCTGGATGACACTAAGCCTGATGGCTCTGTTCCTGCAATTATGGGTTTCATCCTCGCACGCAAAAGCAGAAAGCTAGCTGGACTTACCAGGGAGGAAAGAAAGAAGAGGATCTGTGAGATCTATGCACGGGTCCTAGGCTCAGAAGAAGCTTTGCATCCGGTGCACTATGAAGAGAAGAACTGGTGTGAAGAGGAATACTCCGGAGGCTGCTACACAATGTACTTCCCCCCTGGCATTCTCACACAGTATGGAAAAGTGCTGAGGGAGCCTGTGGGCAGGCTGTACTTTGCTGGTACCGAGACCGCCACAGAGTGGAGCGGCTACATGGAGGGAGCTGTGCAGGCTGGAGAGAGAGCAACcagagagATTTTGTGTGCAATGGGGAAACTCCATTCAAGTCAAATCTGGCAACCAGAACCTGAATCTATGGATGTCCCTGCTTTTCCTTTTGAGACCACGTTCTGGGAAAGAAACTTGCCCTCTGTGGGAGGATTCTTTAAGTTTGTGGGCGTGTCCTCTTTCCTGACAGTTGCGACAGTAGTTGGTGTCGTGGCCTATAAGAAGGGACTCCTCCCTCGATGCTAGACCTCCTCTGCCTGTGTAGCTTCTGTCACTGGCCTTGGTTAAGCCTGCTACTCCTGTCAGTCACCTTTCCAAGGTTGTGGTACAGACTGGGCGCGAGCTCAAGTCACTGAGACGAGATCTGAAACTCTGAATCATGTTCTTATCACTCAATCACGTCTTAATGAAAAGTTTAATTCTCCCAGCGATGATTCAGTAGATTGTTAAGTATTAAAATCCTTACCCATGGAGAGTGTA

Function

GO:

id name namespace
GO:0042402 cellular biogenic amine catabolic process biological_process
GO:0042135 neurotransmitter catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006584 catecholamine metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0008131 primary amine oxidase activity molecular_function

KEGG:

id description
K00274 MAO, aofH; monoamine oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651311.1 lncRNA downstream 16319 32682328 ~ 32683648 (-) True LOC111194865
TU232113 lncRNA downstream 20991 32678654 ~ 32678976 (-) True G171463
TU231843 lncRNA downstream 455534 32240638 ~ 32244433 (-) True G171280
TU231788 lncRNA downstream 720675 31979091 ~ 31979292 (-) True G171237
TU231787 lncRNA downstream 732245 31966206 ~ 31967722 (-) True G171236
TU232130 lncRNA upstream 60066 32805637 ~ 32811201 (-) True G171479
TU232149 lncRNA upstream 168347 32913918 ~ 32931640 (-) False LOC111194944
XR_002651392.1 lncRNA upstream 168536 32914107 ~ 32932234 (-) True LOC111194944
TU232179 lncRNA upstream 215033 32960604 ~ 32965237 (-) True G171523
TU232182 lncRNA upstream 277508 33023079 ~ 33099931 (-) True G171525
XM_022680590.1 mRNA downstream 62790 32408907 ~ 32637177 (-) False cask
XM_022680582.1 mRNA downstream 62790 32408907 ~ 32637177 (-) False cask
XM_022680588.1 mRNA downstream 62790 32408907 ~ 32637177 (-) False cask
XM_022680585.1 mRNA downstream 62790 32408907 ~ 32637177 (-) False cask
XM_022680580.1 mRNA downstream 62790 32408907 ~ 32637177 (-) False cask
XM_022680592.1 mRNA upstream 12936 32758507 ~ 32776018 (-) False ndp
XM_007227823.3 mRNA upstream 12936 32758507 ~ 32771966 (-) False ndp
XM_015604852.2 mRNA upstream 36809 32782380 ~ 32798126 (-) True efhc2
XM_007227822.3 mRNA upstream 36809 32782380 ~ 32798125 (-) False efhc2
XM_015604876.2 mRNA upstream 38712 32784283 ~ 32798126 (-) False efhc2
TU231746 other downstream 796440 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4012288 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 4797068 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 6794485 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 7190551 25502135 ~ 25509416 (-) False LOC111194864
TU232121 other upstream 12947 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 428482 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 468751 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 2191734 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 2476144 35221715 ~ 35222225 (-) True G172060

Expression Profile