RNA id: TU232767


Basic Information

Item Value
RNA id TU232767
length 3761
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id G171979
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 34471788 ~ 34560383 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatatatatatatatatatcgatgTGCGTGTGTAGGGCTGAGATGCCAGGCCGGTGGCGGCTTGTTTTGCAGGGAATCATTCAGGAGGACTGGTGAGCCAAACCCTGTCACCACAGAGACACTGTGGAGCACAGATGTGGTCGCTGTCTCAGGCACTGTGCCTGATCCCCGTCCTCTTTTTTACTTTagtgcccaaaaaaaaaaggagacgCGGCGGTGGCTGGCCAAGCACTTGTGATTTCCACCAGCGTTCGCTCGAGCAGCGTCCGTCGTGCGTGGCGTTAAACATATCGATACTGAATAGTTTCAGAGTGAACATGTGAAcaagtgaataagtgaataagTGAACATGTGAAGATGTGAGAGCTAGCAAGCGCCTCCAGGCCCAGTCTCCAAAGTAAAGTACGAGAGGAATCCGAGttctatttttcttctttacatCTTTACTCTTTTAGTTTAGAGCGCAGGCTCTAGGAACATCTATAGGCCTTGTAGGCCTCCGGTCCCTCGTGCGCCATCTCCTCTCCGAGCTACTACAGCCGGGCTACAGTCTACAGGCTGGTGATCCAGGCGGAAAACAGCCGCCTTAACGTAAAGCAACGTAACGTAACGTAGGATAAATCTGCTCTCAGAGGCAGCGTGTTAAAGTGGCCGGGTACTTTTAAAAGTAGGCGACGTTGACATTGCTGTTGGCTGCATCCTCTTTCCGTTCAGCAAAAAGCATGGGCAAGGTTAGTATTGTGTTCTGTTCTTGCAGTGTGATGCAAAGCGAGAGatggcttattattattatatatgacaAATGTTTTCACTGtatacgataaaaaaaaaaagctttaaaaaaatagatttttaatattGACTAGATACTACAGTTAAATAAGGAGACTTGCTTTCCTAGCTCAGCATGCAGAGTCCAGTACTGCTCATATTGGCCTATGGTGTGCCTGTGATGACCTCTAACCCAGCATGCAAAAACATGTACCCAGTCTGTGCTGGGTTAAAGGTGCCTCATGCCCTCCCCAGAGAAAAcaatttctctttctatctctctctctctctctctgacacacacacacacacacacacacacacacacacacacacacacacacacacagatacaaacacacacagagatacaaacacacagaggtggaaaaagtactgaaaaattgtaattaagtaaaagtacctttactttgctaaaattctacttaaaagtaaaagtatccaTCTAAAAAtatactcgagtaaaagtaaaagtacccatctataaatgtactcgagtaaaagtacccatctaaaactctactcgagtaaaagtaaaagtacccatctaaaattctactcgagtaaaagtaaaaaagtactcaatttaaaatgtactttgagtaaaatttacatagttacttttaattatttgatgtaaaaaagtaaaacataaattaaattgttttaatgaactattattccacataataatttgcaCCTTtgaggcagtatttgttcagacccccCATGAAACATTTTCAAGAGCAAGtgttataggtttctatgattaattttttttctttactgttaaaaagttatggtcatataggtgactatatactgtatttctttagtttaacagacaattgtttttttttccccagcattttattttgtactcagtaattgggagttttctaatgtagcaaagtaaattacttttgTTAacatgtacttgagtaaaagtaaaattacctattttcaAAACTactcaaaaaaatacaaattactcataaaaatctactcaattacagtaacttgagtaaatgtaattcattactttccacctctgcaaacacacacacacacacacacacacacacacacacacatacagatgcaCACAGAGACAAAGATGCACAAACAGTAGCTTATACTTACAATACAATCTAATTCAATtcactaaaacacacaatacaatacaaactaCAGTTCTACACTAATTCTCAGTCCACTCTGAGGTTAATCCTGAATTTTACCAaagttcctctctctctttctctctctctctctctctctctctctatatatatataaatatattctgtATGTCCAAGAATTCAGAACCACCAATTCCAACCAGTTAAGTGCAGTGGGCAGCACTTTAATACAACAAAAGCTCGCTCGTCCACTCCGCCCAGTtcagttttttcagttttgctCACTGTGACTAAAATTCATTCTCATCACTAATCAACAGCACTAATCAACAACCGATGATTGATTTTGCCTTTTTAGTACAGGAACTCCTGGATGGTTGCGACTGCAGTCGTGCAGTCATGATGAGAGTACTGTATATTGTTCTTATAAAACAAagcaaacgaaaaaaaaaaaactttaaaaaaatatataaaaaataaactaacaagGGTACCTATGAATTAATCacctgcatgttttttttttcccttaaggACCAAAGTATGGTATGAGGACAGCATAATGGATATAATGGATGGATCATTAGTCTCTGTTTAGGTCAGCATCATTGAATGGGCATGATAATATAAAGTTCTCTCatactttctctttctatttctatttatcTTACTCTGGATTGGAATCATTgcacttgttttcttttgtttttttggttctgaATCATAATCTAGTCTAATCTCCGCTTTCAATTTGCCAATTGTTATCAaggattattataattattattattatccgaCACTTATCAATCATCCCATCCCATTTGTTATGAAGCCTGTCTTGCTTTTTACCGAATTTCCGTCGTGTTTTTCTGACGAACACGATTTCGAATGTTGTTCTGTAAGCTGAAGCTGGGCTGCTAAATCTACTGCGAATATATATTCGAGGCTTCGTTCGAAGActttctattctattttctgGAGTTTATGGGGATTATGAGCTAGTTTCTTATTAGGACGTGTtaaagcagttaaagcacatTAGTTAGTCTTACATATTTGTCTGTATAAAGCTACTTTAATGCTAGAATGACATGCAGTACAGTACTATTACAGGACAAGGAGCTTAAACCCATTTTGGAATCCAGTTGAGGGCTGGTGTCCcacttttacatatatatatataaaaaaaaaaaaacacttttaatcaTCATTCTCTCCAATGAACTCTACATGCTGGGCTAACTGGCCCTGCGAGAACCAGTTGACTGGTTTATATGAAGgttgaatttatttttgtataagaCTGGTGAGTAAATGTGTACatctttgtttttgtctttctgtcttttagtctgtttgtctgtctgtctgtctgtctttattttatatattattttgttcgTTTTCTCTTGCTGATGTTTCAGAGTCAGTTCTGTTCCATGCAGGTCGTGTGTTGTTGATTTTAATTCTCGATTCTCGATTCTTGATTCCTATTCGTCAACAGGAGCTATCATCGAACAAATAGGTTTCTTTCTGTTGTTTCTGTCGTTTCTATTTATTTcgttttttatatttgaatgtTTCCGTATCATCTTCAGTTGGACCACTGTTTCATCTGTTTCATCTGTTGCATGGGAAGAGGATGGCATTTAAGAACTGCATGTTGTAGGCTATGTGTATCAAGAAATGTTGGTATGTACTGctaattttacatacatatatgcaAAGAGTTTGTCTGCACtgtacagtttgtgttggttgtATACACAGATACAACatattgaataaaatatttatataaaggttgaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232733 lncRNA downstream 212041 34255406 ~ 34259747 (-) True tmtc4
TU232732 lncRNA downstream 213831 34255406 ~ 34257957 (-) False tmtc4
TU232470 lncRNA downstream 304142 34167387 ~ 34167646 (-) True G171768
TU232433 lncRNA downstream 408293 34063152 ~ 34063495 (-) True G171732
TU232414 lncRNA downstream 466916 34004364 ~ 34004872 (-) False G171716
TU232790 lncRNA upstream 63338 34613708 ~ 34614549 (-) True G171992
TU232792 lncRNA upstream 92347 34642717 ~ 34666830 (-) True G171994
TU232809 lncRNA upstream 235269 34785639 ~ 34785893 (-) True G172007
TU232837 lncRNA upstream 262896 34813266 ~ 34819641 (-) True G172019
TU232848 lncRNA upstream 283353 34833723 ~ 34834376 (-) True G172027
XM_022680007.1 mRNA downstream 26549 34323173 ~ 34445239 (-) True nalcn
XM_022680006.1 mRNA downstream 197999 34255377 ~ 34273789 (-) False tmtc4
XM_007227775.3 mRNA downstream 444950 34021969 ~ 34026838 (-) True zic5
XM_007227778.3 mRNA downstream 596483 33870988 ~ 33875305 (-) True LOC103047371
XM_015603986.2 mRNA downstream 630173 33838702 ~ 33841615 (-) True gpr183
XM_022680632.1 mRNA upstream 56 34550426 ~ 34759577 (-) False fgf14
XM_022680633.1 mRNA upstream 56 34550426 ~ 34728940 (-) False fgf14
XM_022680631.1 mRNA upstream 56 34550426 ~ 34626698 (-) True fgf14
XM_022680634.1 mRNA upstream 263057 34813427 ~ 34815919 (-) True LOC111194948
XM_022680635.1 mRNA upstream 268726 34819096 ~ 34821789 (-) True LOC111194949
XR_002651393.1 other downstream 1235910 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 1295504 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 1699656 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 2568261 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 5784109 28686050 ~ 28687679 (-) True G170854
TU232866 other upstream 386935 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 671345 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 820073 35370443 ~ 35371387 (-) False olig2

Expression Profile