G170170


Basic Information

Item Value
gene id G170170
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 25866117 ~ 25869101 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU230400
CACAATTCATATACTGCACTAAACATTGTCAATTATTTGAATTTAAAGCAGGCAGGGCAAACACTGCATAACCTAAGTCATATTTGTGTCACGGTTCTCCATAATGCTGGTTATCAAATCGTTTCTCTCACAGCACCTCTGTTCTGTATGTGAGAGACAGGGGTTTTGTTTAACAGTGTTCAGGCAAGACTCCTGAAACTCCACTTGAACAGGATTAGTCTGAGAACTGCTTTGGATTAGAGCGTCTGCAAGATGCCGTAAATGTAAAATGATATAATTGCTGCGGTGTTGTTGTAATTGTCTGAAATGGTGTTTGcacagcagttttcagctcaGACTTTTTCCATCGTTACAAACATTCTCCAGATTTTCAGCGCCTGCTTACGCTCACCTGGGGAGCCAGAGAGGTACTGCAGATGTTTGCGTTTGGAGCTAATGTGCAGAACACATGGCTGTTCTGCCCTGAATTGCCCTGTACTTTTGTGATCAACTGCTGTTTTTAAGTAGCTAGTTTGCATGGAGTACTGTAGAGCTAGataccaaaagtcatgggatttGGACATCCAAAAAGTCATGGTATTGCAGTATTtaaacccagagagagcaaggccaattgtgctccctctgggctccggtagccgatggcaagctgcatgaccgggattcgaagcggcgatctcccgatcatagtggcagcgctacTCGGAGTCCCTGGTGCATTCCATGTCTAAAGTTGTGTGTCTTCCGGAAACATGTCTTAGAAGGTAACACCATCCACGGTGGACAGCACATTGGCTGGTAATGATTCTGACTAGACTGTGACTGAAAGTGACTGAAAATCTCATCCATATTTAATCCAAAATAACCCAAAATAACATATCccgcagttcagttcagtgtgccTCAACTTCCAAGGGACATGGAAAAAGTCATGGGTCATTGTACTCGTCTGTGTcacatgacatttggcataACAGTATTTATCACTTGGATTCTGTATTCCACCTGTGATTTCTGATAACGCTTGGGTAATATGTGTCCTGTCTGGGACACTAAATCTGAAATAACTTGATTGTGACATCAGTGCCAGCGTGGAAAAACAGCCAGAAGTTACTCAACATACCTTTGAGATTGCAGACACGACACATAGCAGCAAATACTGTGGACTCCATCTCTATATTCCTGACGCCAGCTTCGTGAGCCTTCCTCAGATACTCCAGCTTTTCTTCAGTGGAGAACGAGCACAGAGCACCGTCCAATCGGCCCTGCCCTGGAGCAGACGGAGAAGTTACGTttttcaactgaattactgaaataaagtaacttttcaattattattaaactttCCATCCATCCGACAACTTAACTGCAGTACAGGTTTCTTCATTACCTTCATAGAAGTCATGTGTGCACATGGTGTTGCCGATGACGGTGGGGAAGCCGGACAGCTCAGCTGAACACGCAGGAGCTCTCTGGCCACCTCTTCATCCAGCTCTGTGCTCCTGATGATCACCTTTCCAGAACCACCTGCTCAAACTGGGGCCGGAAGAAGGAGTCCACCGCTTTATCTGTGATCACCACCGTGCCTGGGGCAAgaccttaacacacacacacacacacacacacacacacacacacgtacatatAAGTTACACATAAGCAGCCTTCATTTTTACTGTGTTGTCACTGTGTTGAAGATGACATAGTAATGGTGGTTTGCAACATCACCAGCTACATTTCGGAGAGGAGGTATGAGGTACCAAAATGTGAGTAGAGAAAAGTAGATAACTGAAGAAGCCAAAAGAGGAAGGCCACAAAAGATCTGGACATGGCTGCAGTGTAACAACTATACGAAAGGAGAGCTATGAACATTTTGTATACCTTTTCTTactatttttcctctttttttcctctttttgtgTGTGATGTTGGTAAGTTGTAAACTTTCTTTATAAAAACTGCTCCAATTTCTCCAGTCATTTGGATATAACAACTTAAAATACCCAATAAATGACACAGTAAAAGCTGTTCAgacaaaatagataaaaatagaagAAGATTTTAGGTACCGATGCCGCCGGAGGTTCCGATGCGGAAGAGGACGACGTCACGGCAGC

Function

GO: NA

KEGG:

id description
ko00980 Metabolism of xenobiotics by cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
TU230400 True 2117 lncRNA 0.44 2 25866117 25869101

Neighbor

gene id symbol gene type direction distance location
LOC111194933 NA coding downstream 85116 25774326 ~ 25781001 (-)
LOC103035604 NA coding downstream 111526 25731814 ~ 25754591 (-)
LOC103035913 LOC108430488,LOC108266232 coding downstream 145343 25685067 ~ 25720774 (-)
LOC111194961 NA coding downstream 370378 25491361 ~ 25495739 (-)
LOC111188175 NA coding downstream 376460 25476927 ~ 25489657 (-)
LOC103035301 NA coding upstream 160377 26029478 ~ 26031385 (-)
LOC103038930 NA coding upstream 768475 26637576 ~ 26647990 (-)
LOC103038625 LOC103038625,LOC108430498 coding upstream 784073 26653174 ~ 26663616 (-)
LOC103038316 NA coding upstream 794926 26664027 ~ 26670958 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 coding upstream 1194091 27063192 ~ 27070005 (-)
G170146 NA non-coding downstream 54314 25796700 ~ 25811803 (-)
G170067 NA non-coding downstream 350686 25514996 ~ 25515431 (-)
G170045 NA non-coding downstream 439922 25425786 ~ 25426195 (-)
G170042 NA non-coding downstream 477651 25388090 ~ 25388466 (-)
G170038 NA non-coding downstream 479402 25386403 ~ 25386715 (-)
G170198 NA non-coding upstream 203620 26072721 ~ 26073175 (-)
G170209 NA non-coding upstream 267674 26136775 ~ 26137154 (-)
G170210 NA non-coding upstream 268716 26137817 ~ 26138240 (-)
G170213 NA non-coding upstream 327223 26196324 ~ 26196679 (-)
G170245 ptpn4 non-coding upstream 442675 26311776 ~ 26320118 (-)
LOC111194864 NA other downstream 356701 25501940 ~ 25509416 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other downstream 1513209 24307650 ~ 24352908 (-)
G169567 NA other downstream 2970685 22894768 ~ 22895432 (-)
man1a2 man1a2,LOC107668846,LOC107658234,LOC107724469 other downstream 3389845 22338439 ~ 22476272 (-)
G169286 NA other downstream 4043079 21822713 ~ 21823038 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other upstream 357356 26226457 ~ 26252266 (-)
LOC111194963 NA other upstream 2031090 27900191 ~ 27902899 (-)
G170854 NA other upstream 2816949 28686050 ~ 28687679 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 6026731 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 6889406 32758507 ~ 32776018 (-)

Expression


Co-expression Network