RNA id: TU230400


Basic Information

Item Value
RNA id TU230400
length 2117
lncRNA type intronic
GC content 0.44
exon number 2
gene id G170170
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 25866117 ~ 25869101 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACAATTCATATACTGCACTAAACATTGTCAATTATTTGAATTTAAAGCAGGCAGGGCAAACACTGCATAACCTAAGTCATATTTGTGTCACGGTTCTCCATAATGCTGGTTATCAAATCGTTTCTCTCACAGCACCTCTGTTCTGTATGTGAGAGACAGGGGTTTTGTTTAACAGTGTTCAGGCAAGACTCCTGAAACTCCACTTGAACAGGATTAGTCTGAGAACTGCTTTGGATTAGAGCGTCTGCAAGATGCCGTAAATGTAAAATGATATAATTGCTGCGGTGTTGTTGTAATTGTCTGAAATGGTGTTTGcacagcagttttcagctcaGACTTTTTCCATCGTTACAAACATTCTCCAGATTTTCAGCGCCTGCTTACGCTCACCTGGGGAGCCAGAGAGGTACTGCAGATGTTTGCGTTTGGAGCTAATGTGCAGAACACATGGCTGTTCTGCCCTGAATTGCCCTGTACTTTTGTGATCAACTGCTGTTTTTAAGTAGCTAGTTTGCATGGAGTACTGTAGAGCTAGataccaaaagtcatgggatttGGACATCCAAAAAGTCATGGTATTGCAGTATTtaaacccagagagagcaaggccaattgtgctccctctgggctccggtagccgatggcaagctgcatgaccgggattcgaagcggcgatctcccgatcatagtggcagcgctacTCGGAGTCCCTGGTGCATTCCATGTCTAAAGTTGTGTGTCTTCCGGAAACATGTCTTAGAAGGTAACACCATCCACGGTGGACAGCACATTGGCTGGTAATGATTCTGACTAGACTGTGACTGAAAGTGACTGAAAATCTCATCCATATTTAATCCAAAATAACCCAAAATAACATATCccgcagttcagttcagtgtgccTCAACTTCCAAGGGACATGGAAAAAGTCATGGGTCATTGTACTCGTCTGTGTcacatgacatttggcataACAGTATTTATCACTTGGATTCTGTATTCCACCTGTGATTTCTGATAACGCTTGGGTAATATGTGTCCTGTCTGGGACACTAAATCTGAAATAACTTGATTGTGACATCAGTGCCAGCGTGGAAAAACAGCCAGAAGTTACTCAACATACCTTTGAGATTGCAGACACGACACATAGCAGCAAATACTGTGGACTCCATCTCTATATTCCTGACGCCAGCTTCGTGAGCCTTCCTCAGATACTCCAGCTTTTCTTCAGTGGAGAACGAGCACAGAGCACCGTCCAATCGGCCCTGCCCTGGAGCAGACGGAGAAGTTACGTttttcaactgaattactgaaataaagtaacttttcaattattattaaactttCCATCCATCCGACAACTTAACTGCAGTACAGGTTTCTTCATTACCTTCATAGAAGTCATGTGTGCACATGGTGTTGCCGATGACGGTGGGGAAGCCGGACAGCTCAGCTGAACACGCAGGAGCTCTCTGGCCACCTCTTCATCCAGCTCTGTGCTCCTGATGATCACCTTTCCAGAACCACCTGCTCAAACTGGGGCCGGAAGAAGGAGTCCACCGCTTTATCTGTGATCACCACCGTGCCTGGGGCAAgaccttaacacacacacacacacacacacacacacacacacacgtacatatAAGTTACACATAAGCAGCCTTCATTTTTACTGTGTTGTCACTGTGTTGAAGATGACATAGTAATGGTGGTTTGCAACATCACCAGCTACATTTCGGAGAGGAGGTATGAGGTACCAAAATGTGAGTAGAGAAAAGTAGATAACTGAAGAAGCCAAAAGAGGAAGGCCACAAAAGATCTGGACATGGCTGCAGTGTAACAACTATACGAAAGGAGAGCTATGAACATTTTGTATACCTTTTCTTactatttttcctctttttttcctctttttgtgTGTGATGTTGGTAAGTTGTAAACTTTCTTTATAAAAACTGCTCCAATTTCTCCAGTCATTTGGATATAACAACTTAAAATACCCAATAAATGACACAGTAAAAGCTGTTCAgacaaaatagataaaaatagaagAAGATTTTAGGTACCGATGCCGCCGGAGGTTCCGATGCGGAAGAGGACGACGTCACGGCAGC

Function

GO: NA

KEGG:

id description
ko00980 Metabolism of xenobiotics by cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230371 lncRNA downstream 54314 25796700 ~ 25811803 (-) True G170146
TU230259 lncRNA downstream 350686 25514996 ~ 25515431 (-) True G170067
TU230234 lncRNA downstream 439922 25425786 ~ 25426195 (-) True G170045
TU230231 lncRNA downstream 477651 25388090 ~ 25388466 (-) True G170042
TU230227 lncRNA downstream 479402 25386403 ~ 25386715 (-) True G170038
TU230434 lncRNA upstream 203620 26072721 ~ 26073175 (-) True G170198
TU230446 lncRNA upstream 267674 26136775 ~ 26137154 (-) True G170209
TU230449 lncRNA upstream 268716 26137817 ~ 26138240 (-) True G170210
TU230452 lncRNA upstream 327223 26196324 ~ 26196679 (-) True G170213
TU230484 lncRNA upstream 357387 26226488 ~ 26231182 (-) False LOC103029246
XM_022680481.1 mRNA downstream 85116 25774326 ~ 25781001 (-) True LOC111194933
XM_022680479.1 mRNA downstream 111526 25731814 ~ 25754591 (-) True LOC103035604
XM_022680475.1 mRNA downstream 149522 25685067 ~ 25716595 (-) False LOC103035913
XM_007260596.3 mRNA upstream 160377 26029478 ~ 26031385 (-) True LOC103035301
XM_022680485.1 mRNA upstream 357356 26226457 ~ 26252266 (-) False LOC103029246
XM_022680484.1 mRNA upstream 357356 26226457 ~ 26252266 (-) True LOC103029246
XM_022680488.1 mRNA upstream 768475 26637576 ~ 26647990 (-) True LOC103038930
XM_007260437.3 mRNA upstream 784073 26653174 ~ 26663616 (-) True LOC103038625
TU230256 other downstream 356701 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 1541612 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 2970685 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 3507710 22338439 ~ 22358407 (-) False man1a2
TU229253 other downstream 4043079 21822713 ~ 21823038 (-) True G169286
TU230416 other upstream 27494 25896595 ~ 25905482 (-) False LOC103030841
TU230949 other upstream 2031693 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 2816949 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 6031247 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 6889417 32758518 ~ 32772132 (-) True ndp

Expression Profile