RNA id: XM_022680481.1


Basic Information

Item Value
RNA id XM_022680481.1
length 935
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC111194933
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 25774326 ~ 25781001 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAGCTCTTTTCTGTGTGGTTGTCTCCAGTACAGTGGGGTGTGTGTCCAGCGAGGTGTGTGTCTGCCATGGCTGTGTCTGCACTTTCCTCCAGGCTTCTCCTGCTGGGTCTAAATGCTGCCCGGGTGACGTGTGCGCACCTTGGACGGCCTGGCTGTGTCTTCAGCAACGCTAGAGGAGTGAGCTCAGGCCGAGCACTCAGgacagAGGAAAGGGTAACAGTTCGTTTCATAGATCGGGATGGAAAGAGAATTTCAGTCAACACTATAACAGGAGTTTCACTACTTAACATTGTTGTCGACCAGAATTTAGACTTTGAAGGATTTGGTGCATGTGAAGGAACGTTAGCCTGCTCTACATGTCACCTTATTTTTGAAGAGAAGATCTACAACAAGCTCCTAAATGAAACCACAGTAGCTGATGAAGAAATGGACATGCTGGACCTGGCCTATGGCCTGACGGACACGTCTCGGCTGGGATGTCAGGTGTGTGTGACTAAAGATCTGGACGGGATGGTTGTGCGTGTACCTGAGGCTGTGTCTGACGCTAGGAAGACCAGCGACAAGGACTCAGCTTCCTGAAGCCCAGTCTGTGATAGAAGACACCTACTGTTTCTGCCTTTTGAGTCTCTGCTGCCCATTGTATACAGTTTATCTCTAAAAGACCACCCATAAAGCCAACTTCTTCTGCATTCCTCTGAAGACTGAGAGAGTCCGCTTATGTGTTTTGTATGACGCTTTCTAAGGGGATTTGAATTTAGTGGAAGGTTAAGGTTACGCTCTGGGATGTAAGTTGCtgcataaaatgtaaaacatgttaaaaggGTTCATAGTGTTGCAAAACTTACATTTGTTCTGTGAAGTACAATACAGTGCAGTGTAATGTAATTAAGTCTGattctaattaaataaaggtaattgcatgaaattaaataaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG:

id description
K22070 FDX1, ADX; ferredoxin-1, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230259 lncRNA downstream 258895 25514996 ~ 25515431 (-) True G170067
TU230234 lncRNA downstream 348131 25425786 ~ 25426195 (-) True G170045
TU230231 lncRNA downstream 385860 25388090 ~ 25388466 (-) True G170042
TU230227 lncRNA downstream 387611 25386403 ~ 25386715 (-) True G170038
TU230214 lncRNA downstream 486714 25214731 ~ 25287612 (-) True G170025
TU230371 lncRNA upstream 15699 25796700 ~ 25811803 (-) True G170146
TU230400 lncRNA upstream 85116 25866117 ~ 25869101 (-) True G170170
TU230434 lncRNA upstream 291720 26072721 ~ 26073175 (-) True G170198
TU230446 lncRNA upstream 355774 26136775 ~ 26137154 (-) True G170209
TU230449 lncRNA upstream 356816 26137817 ~ 26138240 (-) True G170210
XM_022680479.1 mRNA downstream 19735 25731814 ~ 25754591 (-) True LOC103035604
XM_022680477.1 mRNA downstream 53552 25685067 ~ 25720774 (-) False LOC103035913
XM_022680476.1 mRNA downstream 56124 25685067 ~ 25718202 (-) True LOC103035913
XM_022680475.1 mRNA downstream 57731 25685067 ~ 25716595 (-) False LOC103035913
XM_022680474.1 mRNA downstream 60453 25685067 ~ 25713873 (-) False LOC103035913
XM_022680482.1 mRNA upstream 17509 25798510 ~ 25905616 (-) True LOC103030841
XM_007260596.3 mRNA upstream 248477 26029478 ~ 26031385 (-) True LOC103035301
XM_022680485.1 mRNA upstream 445456 26226457 ~ 26252266 (-) False LOC103029246
XM_022680484.1 mRNA upstream 445456 26226457 ~ 26252266 (-) True LOC103029246
XM_022680488.1 mRNA upstream 856575 26637576 ~ 26647990 (-) True LOC103038930
TU230256 other downstream 264910 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 1449821 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 2878894 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 3415919 22338439 ~ 22358407 (-) False man1a2
TU229253 other downstream 3951288 21822713 ~ 21823038 (-) True G169286
TU230416 other upstream 115594 25896595 ~ 25905482 (-) False LOC103030841
TU230949 other upstream 2119793 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 2905049 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 6119347 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 6977517 32758518 ~ 32772132 (-) True ndp

Expression Profile