RNA id: XM_022680477.1


Basic Information

Item Value
RNA id XM_022680477.1
length 3892
RNA type mRNA
GC content 0.51
exon number 31
gene id LOC103035913
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 25685067 ~ 25720774 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctctctctctctccatccttctcctGTGGATGGCTGATGCAGAACTGCCGGTGAAACTGGGACACGTCTGAGGACATCTCGTCATCCTTTACCTTCCAGTCTCCCGCTTACCaccctccatccatccctctctctctcctgtgtaTATATCTGGATCTGGAGGATGGCGATGGTGTGGGTGAAGACGCAGAAGGATGTTGTGCAGGTTCTGCTGCGAAGACTGAGCAGTGTCAGTCAGAATGTTGaTGAAATTATGGAGAAGGAGACGAGTCCACTCTGTGCTGCTGACATCATTGCCGAGCTGAAGAGGAAGTTTGCCTTCCTGTCAGGGGGCAGAGGTCAAGATGGCAGCCCAATCATTATTTTCCCAGAATTCACTTCATTTGGTGAGATTGGAGACCAGGAGTTCCACAATGTTCTGACCTACCTGACAAGTGTTCCAAGTTTGAGTGCATCAGGGGTGGGCTTTATATTGGTGATTGACAGGCGCCAGGACAGATGGGCCTGCATGAAGGGAACGTTACTCCGTATCTCGggcCACTTTCCAGGGAACCTGCGACTGGTTCTGGTGCTGCGGCCCAGCACTCTCATCCAGCGCACTCTCTCAGACGTCCTCTTCAAACTCCACAGAGACGACTTCAAGATGAAGGTGCCGgTCATCATGTTGAGCTCAGTGGCTGAGCTGCACACTTATATAGAGAGGAGTCAGCTGACTCTGGAGCTGGGTGGCACTCAGCAATACTGCCATCAAACCTGGATCTCCCACCGCACAgaCATAGAGGGCTTTGCTTTGCTGGTGAAGAGGATGGCACACAGGCTGCAGGCTTTTGGCAGGGAACTGGCGGAGACGGATCTGCCTAACTCCCCCCTAGCAACCAGCAATCTgctcaacacacactgcagcaagagagagagcatgaagGAGGAGATGGCAGGAGCTCTCAGTCAGGGGCGTAAGATCTTGGAGAATATTCGGGAGCCAGTGCGCAGGGATCCAGACAGCAGCTTGAACCCAGACCAGCTGGAGAACCTGGCTACTGTTCACAGGTTATTGTCTCAGTTAAACGAGAGCTCGTCGGCATTTGATGATTTCTGGCTGCAGCATCAGAACAAACTGGAAATGTGTCTGAAACTGCGGCAATTTGAGCACAACTTTCAGCAGGTGTGGGAGGAGCTCGAGCAAGCAACGAATAGAGTGTCTGCTTCCTCGCATGTAGGAATGAGCCCCAATCACACAGAACATCTTCTCAGAGAGCTGACCAGCCAGGAGGAGAGAGCATGTGATCTTCTGGACAGGTCGAGGGCTCTGGTTGCTGAGGGTGAAGGTCTGATTGACAGCTGTGAGTTTGCTGACGATGGTGTGAGGGTGAAATGTGGTGAGcttcagagagcaggagagaaacTCCCACAGCAGCTCCAGAACAAGAGAGCTCTACTGATGCAGGCCATGGAGCTCCACCAGAGACTGCAGAGTgtgTCTAAATGGTGTGAGGATGGAATTTACATGCTGGCCTCTCAGCCACTTGACAGATGTCAGTCACAGGAGGGGGCGGAGTCTGCACTGCAGGAGCTGGAGGGGTTTCTAGAGACGGCCAGTGAGAGGCAGGAGTGGGACATGGATGCGGTTTGGACAGAGTATGAGAGTGTGTTGAACGAAGAGCTGAAGGAACAGGTAAAGCGAGTGTTTGAGAAGAGGACTCTGCTGCTGGAGATGTTTGAGAAGAGGAGAGTCAGTCTGACGAAGCTTGCAGCCAAACAGACACGCCCAGTCCAGCCTGTGGCCCCCACACCAGAGGCCATCAAATCACCTCCCTCCTCCCCAGCTCTTAGAGTTCGTGAAAAGAGCTGCGCTACTAAAGatgcagagagaaacagcaccCATGATGAAgagtccTCTGAACAGAACGGAGGTAACAGCCGTACAGCCTCTGTGTCCGATGAAGAGGAAAACCTGACCGTCCTTCGCAGGCATGTAATGAATGAGCTGCTGGAAACAGAAAGAGCGTATGTGGAGGAGCTGCTCTGCGTATTACAGGGTTATGCCGCCGAGATGGAAAACCCAGCCATGGCTCCTCTCATCCCTAACGTCCTGCAAACCAAGAAGGATGTTCTGTTTGGTAACATGCAGGAGATCTACCACTTCCACAAAACgACATTTCTGAGAGAGCTGGAGACGTACACTGACTGTCCGGAGCTTGTGGGACGCTGTTTTCTGGAGAGGATGGGAGATCTGCAGATTTATGAGAAATACTGCCACAATAAACCTCGATCTGAGAGCCTCTGGAGACAGTGCTCAGACTGTGCATTCTTCCAGgaaTGTCAGAAGAAACTGGAACACAAACTGGGTTTGGACTCTTACCTCCTAAAGCCGGTTCAGAGAATTACTAAATACCAGCTCTTGCTGAAGgagATGATTAAGTACAGCAAAACCTGTGAGGGTTTGGTGGAGCTGCAGGCGGCTCTATCCTCCTTGTTGGGAATTCTGAAGGCTGTAAACGACTCAATGCACCTCATCGCCATCACAGGATACGAGGGTAACCTGGGTGTCCTCggccggctgctgatgcagggCTCGTTCAGCGTGTGGGCGGAGCATAAGCGTGGTCATGTGAAGATGATGGAGCTGGCACGCTTTAAACCCATGCAGAGGCACCTGTTCCTCCACGAGAGAGCGCTGCTCTTCTGCAAGCGACGTGAGGAGAGCGGCGAGGGCTACGAGAAGGCCCCCTCCTACAGCTTCAAGCAGGAGCTCAgcatgAGTGCCATTGGAATCACAGAGCACGCCAAGGGAGATAATAAGAAGTTTGAAATCTGGTCCAGCTCCAGGGACGAGGTTTACACTGtgcagGCGGCGTCTGAGGAGGTTAAGACTGTGTGGGTAAGAGAAATCCGAAAACTTCTAACCGGACAGCTGGAGGCGTGCAGAGAAGCCAGCCAGCAGAGGACTACTGATCAGATACCTTCAGAGAACAATTCAATTGACAGACTTGTCAGAGATGGGCATAGCTTTCtgaggagggatggagggatggagaaacagagaacagaagaagaaaatgggAATGAACCCAGCAGCCCTGAGGGCTCTAAAGCAGAGCAAGCAGTGGGTTCGTTGCTTGGAACTGAGGCCAAAGCCAAACGGCAGGAGATCAGAAGTGACCCAACTCCACTAGAAACAGGCGCACACCCCCATTTGGGCGGAGTCAGGTGGTTAAGTACATCAAGCCTCTTTCCGAACCGTAGGAGAGGATGGATCAAAGGCTCTCTTTCACTGGACGCATCTATGGAGAATGACGGCTATTTCAGCGCAGAGGATCAGGTGACTTCCGATCCTGAGGAAGAGCGGGAAAAGAAAGTGCCTGTAGAAAGACATGAGAATGTGACGACTGTAGAGGAAGAACCCAAACTGCCTGAAGAAGCTGAAGATGGACACCAGTGAGAAGACCTTGAATATCGTGGTCCCAGGAGCCCTGTGTCCCAAAGCTACCACAATCTTAGAATGGAAGCCCCTGCCATTTCTCGAGTTTTCCTCACTCATTGGTCGTACAGCACAAATGTTAATCACTTCATATTAGCAACCTGAGCCTACAATTGTACACACCTTCACGTGCTACAAGGTTCATATCCCTTTAAAACTGTGTGAACTTCCAGTGTTAAACTGTTTATAGTGGTTAAGTCTAGTGCTCTCCATAGTGAACAAAGGTCAGCGTTCCGTTTGCATGAGTACAGTCTTAACCTCTGTGGAAATTTAGCATATCATATATGCAGATATTATTGTTAGAACTGTGACTGCACTGGTTCACTGTTTGTAAAGTCTGTTATTTGTCTACAGCTGTTGGTtgtatgttgtttatatgtgtatttaaagtatatataaaatccAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230259 lncRNA downstream 169636 25514996 ~ 25515431 (-) True G170067
TU230234 lncRNA downstream 258872 25425786 ~ 25426195 (-) True G170045
TU230231 lncRNA downstream 296601 25388090 ~ 25388466 (-) True G170042
TU230227 lncRNA downstream 298352 25386403 ~ 25386715 (-) True G170038
TU230214 lncRNA downstream 397455 25214731 ~ 25287612 (-) True G170025
TU230371 lncRNA upstream 75926 25796700 ~ 25811803 (-) True G170146
TU230400 lncRNA upstream 145343 25866117 ~ 25869101 (-) True G170170
TU230434 lncRNA upstream 351947 26072721 ~ 26073175 (-) True G170198
TU230446 lncRNA upstream 416001 26136775 ~ 26137154 (-) True G170209
TU230449 lncRNA upstream 417043 26137817 ~ 26138240 (-) True G170210
XM_022680010.1 mRNA downstream 178772 25501940 ~ 25506295 (-) True LOC111194864
XM_022680671.1 mRNA downstream 189328 25491361 ~ 25495739 (-) True LOC111194961
XM_022680467.1 mRNA downstream 195410 25476927 ~ 25489657 (-) True LOC111188175
XM_022680465.1 mRNA downstream 1486110 24110733 ~ 24198957 (-) True arhgap15
XM_022680463.1 mRNA downstream 2219551 23313716 ~ 23465516 (-) True LOC103024627
XM_022680479.1 mRNA upstream 11040 25731814 ~ 25754591 (-) True LOC103035604
XM_022680481.1 mRNA upstream 53552 25774326 ~ 25781001 (-) True LOC111194933
XM_022680482.1 mRNA upstream 77736 25798510 ~ 25905616 (-) True LOC103030841
XM_007260596.3 mRNA upstream 308704 26029478 ~ 26031385 (-) True LOC103035301
XM_022680485.1 mRNA upstream 505683 26226457 ~ 26252266 (-) False LOC103029246
TU230256 other downstream 175651 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 1360562 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 2789635 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 3326660 22338439 ~ 22358407 (-) False man1a2
TU229253 other downstream 3862029 21822713 ~ 21823038 (-) True G169286
TU230416 other upstream 175821 25896595 ~ 25905482 (-) False LOC103030841
TU230949 other upstream 2180020 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 2965276 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 6179574 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 7037744 32758518 ~ 32772132 (-) True ndp

Expression Profile