RNA id: XM_022680482.1


Basic Information

Item Value
RNA id XM_022680482.1
length 5079
RNA type mRNA
GC content 0.50
exon number 41
gene id LOC103030841
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 25798510 ~ 25905616 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAGTTTTAGGCTGGATTAGCAGATCTGAGAGCAGCTCTGAGAGCAGAGCTTGGTGAGTGTAAAGGAGCACAGTCAGCGGGCCGGGTTTATCTGAGTAACTGAGAGCAGTTCAGCTCCCTCTGTGTGTGCAGTGCTCAGCTCAGCTGATCAGGAGTTAAAGCGGAGGACCCCTCAATGGCGCCTCGCAGTGAGACCGGGATAATGAAGATCCTCTGGCTGCTGCTAATCCTGACTCAGTTTCATCATGCTCATTCAGCTTCTAAAGGAGTCACTGCCAGTCTGAAGGCCAAGTGGCCTCAAACACCACTCCTGCTGGAGACGAGtGAGTTCATCTGTGAAAGTGGTGAAGAAAAGTTCTGGCCATTTGTCGACACTGTGAGGGAGCTAGCGGTGTACAAGCACGGAGAATCCGTCCGGTCCTACTATAACCTGATCGTTAAGAAGGCCGGACAGTTCCTGACTGATCTTCAGGTCAGCCTGCTGAAGCTCTCCCTGTCCCTCAGAGCGTACTCACCCACTGTACACACATTCCTACAGATTGCCAGTGATGAGCCTCCACCTGAGGCTTGCTCTGCGTTCGTCTCTGTGCACGGGCAGCTCACCTGCAGCACCAAGGACATGAAGAAGCTCCTGAAGACTGCCGCCAAAGCCATACCTGTACAAGAACGATCACAAATACCCAGGAGCGAACGGGACTGATCTTCCTGTGGTTATTCTCTACGCTGAGATCGGAACCAAGAAGTTCAACACATTCCATAAGGTTCTTTCTGAGAGGGCTGAAGAGGGGAAGCTGATCTATGTGCTCCGTCATTATGTGGCTGAGCCAAAGAAGCAGAACATACTTCTGTCTGGGTATGGAGTAGAGCTGGCTATTAAAAGTACGGAGTACAAAGCTGTGGATGACACTCAGGTTAAAGATTCAAAATCATCCACAACCGATGAAGAAGATGACACAGATGAAGTCCAGGGCTTTTTGTTTGGGAAGCTGAAGAAATCGTATCCAGATCTGCAGGGGCAGTTAGGAGACCTGAGGAGGCACCTGCTGGAAAGCACCAACGACATGGCACCTCTGAAAGTGTGGGAGCTGCAAGACCTGAGTTTCCAGGCAGCAGCTCGGATCATGTCCGTGCCAAAGTTTGATTCTCTCAAATTGATGCGCGACCTGAGCCAAAACTTCCCCAGCAGAGCgagATCACTGACGAGAGTGGCTGTAAACCAGGAGATGAGGAAGGAAATTGAGGAGAACCAGAAGCGCCTGAGTGAGAGTATGGGGATTCACCCTGGAGATTCCAGTCTCTTCATTAATGGAATACACATTGATCTGGACTTTCACAACGCGTTCAGCATACTTGACATTATCAGAGGTGAGGCTAAGCTGCTGGAGGGGCTTCATAACCTGGGCATCAGGGGAACCAGCATGAGCAAGTTCTTGCGGATGCCTGTGACCACTGTGGAGGAGAGTTACGCTCTGGATATCAGGCACTCTGCTATAATGTGGATTAATGATATTGAGAGTGACTCCACATACAGGACCTGGCCCTCAAGCCTGCAGGAGCTGCTCAGAGCTACGTTTCCTGGTGTGATTCGACAAATTCGCCGGAACTTCTTTAATCTGgTTCTGTTTCTCGATCCAGCCCAGGAGGAAAGCATAGAGCTGGTAAAACTGGCTGAGCTTTTTTACAAGCATAAGATTCCCCTGAGgattgggtttgtCTTTGTCGTAAACACAGAAGACAAAGTGAATGGATTTGAGGATGCTGGAGTTGCTTTCTTCAGACTGTGGAACTACATCGCTGAAGAGTATGATGTAACCCAGGCTTTCTTATCAATGGTGACTATGTACAACAGAGTGGATGTTGGAGATTCTTTATCAGTGGAGACAGTGACTGCGTATCTGAAGAAGAAGTTTCCAAAAGCTAACACTGCCAAAATACTCGGGGTGGAATCCAGCTATGATGACAAGCGAAAGGCCGGTGCAGTGTTCTACAGGAAGAGTGGTCTGGGAGCACTTCCTGTGGCTCTGTTTAATGGGATTCCCCTCAGCAGTGAAGAGATGGACCCGGACGAGCTGGAGACCATTCTGCTGCAGCGCATCATGGACACCACCAACTTCTTCCAGAGGGCCGTCTTCATGGGTCAGATTTCTGAGGGCCTGGATGTGGTGGATTTCCTGATGGAACAGTCTAATGTTGTTCCACGCATAAACCCTGTGATTCTGAGCCCAGAGAGGAGATACCTGGACTTCACTGCCTCTCCAGTTGCTGATGACTGGGATGACTCAACGATGTTCTCCTTCCTGGACTCCAAGGACAAGACGGCAGTTGTTTCCAAGAGAATGAAGTATTTAACCAAGCACGAAGAGGAGATGGTGTACGGAGTGACCATTTGGATTATTGCGGATATTGAGCAGGCCCCCGGGAGGCAGATGTTGCTGAATGCCTTGAAACATATGAAGTCCAGCAGTTCCAATAGCCGCGTCGGTGTGATTAATAACCCCGGTGGAACTCCCTCTGAAGACAACAGCAGCCTATACAAAGCTATCTGGGCCTCCTTCCTCACCCAGACCTCCAAAAACACCCTCGACTTCACCCTCAAACTCCTTAAAGAGGACACTGTCCAGCTCATCACACATGACACCAAGATTAAAGATCTGCTCTTGCAGGGAATGGACCAGGATGCCTTTGAGAAGAAGTTCAACACTCTGGAGGTGGACTTTCTGCGCAGCCAGCAGCGTTTCTGTCAGGAGGTGCTGAAACTCAAGGCGGGACAAAGAGCTGTGGTCAGCAACGGCAGGATCCTGGGTCCATTCACAGAAGATGAGGAGTTCAGTGCAGACGATTTCCACCTCTTGGAGAAGATCACACTGAGCACATCTGCTGAGAAGATCAAAGCTAAAGTCAAACAAATGAATTTGGCTCCCAGAAAGAGTAGTGATCTCATTATGAAAGTGGATGCTCTGCTCTCGGCCGCTCCCAAAGGAGAGGCCCGGAAGGACATCAAATTTGTAAAAGATAAACACAGTGTTTTGCATCTTGCTGCACGGGAAGACGAGGTCTTCTATGATGTAGTTGCAATTGTGGACCCCCTAACAAGAGATGCTCAGAAGTTGGCTCCGCTGTTGAGTGTGCTTGGTCAAGTGGTCAATATGAGAGTGCAGGTGTTTATGAACTGCAGAGCCAAGCTGTCTGAGATGCCCCTGAAGAGTTTCTATCGTTTTGTGATGGAGGCAGAGGTGTCTTTTCTTGGCAATGATACGATGTCCACCGGCCCAGTGGCTCGCTTTACTGAAATCCCAGAATCCCCTCTGCTCACGCTCAACATGATCACACCCGAGAGCTGGATGGTGGAAGCAGTTAGGAGCCCACATGACCTGGACAACATTCACCTACAGGAGGTCAGTGGGGTGGTGAATGCTGAATATGAGTTGGAGTATTTGCTTCTGGAGGGACACTGTTTTGATATGTCCTCTGGTCAGCCTCCCCGAGGCCTGCAGTTCACACTGGGCATGAAACAGGACCCTCTCATGCAGGACACCATCGTCATGGCCAACCTGGGTTATTTCCAGCTGAAGGCCAACCCAGGTGCCTGGATCCTTAGGCTGCGGAAGGGCCGTTCTGAGGACATCTATCAAATACAAGCGCATGATGGAACAGACTCTCCTGCAGATGCTGAAGACGTCATAGTGGTGCTCAATAGCTTCCACAGCAAGATCATCAAAGTTCGAGTTCAGAAGAAGCCTGACAAACTTAACGAAGATCTTCTCAGCGAAGCTACAGAAAGCAAAGGCCTGTGGGATTCCATAACAAGtgtgtggagtACTTTGGAGAAAAGtctAACAGGCAGCTCCAGCGTGGAGGAAGGGGACAAGAAAAAGGAGGATGTGCTCAACATCTTTTCAGTGGCCTCTGGGCATCTGTATGAGCGCTTTCTGAGaaTAATGATGCTGTCTGTCCTGCGGCACACTAAAACCCCTGTCAAGTTCTGGTTCCTGAAGAACTACCTCTCACCCTCCTTTAAGgaaACTATTCCCCACATGGCTGAGGCCTATGGGTTCCAGTATGAATTGGTGCAGTATAAGTGGCCCCGCTGGCTGCATCAGCAGACGGAGAAGCAGCGCATAATCTGGGGCCACAAGATCCTCTTCCTAGACGTACTGTTCCCTTTAGCTGTGGATAAGATCATCTTCGTCGATGCAGATCAGATTGTCAGGGCAGATTTGAAAGAGCTGAGGGAGCTGGACCTGGAAGGCGCCCCTTATGGGTACACGCCGTTCTGCGACAGCCGGAGAGAAATGGAGGGCTACCGTTTCTGGAAGACTGGATACTGGGCCTCACATCTTGCTCATAGGAAGTATCACATCAGTGCACTGTATGTAGTGGATTTGAAGAAGTTTAGGAAGATTGCAGCAGGTGACCGTCTTCGTGGACAATACCAAGCCCTAAGCCAAGATCCCAACAGCCTTTCTAATCTGGACCAGGACCTTCCCAATAACATGATCCACCAAGTGGCGATAAAGTCCCTTCCTCAGGAGTGGCTGTGGTGCGAGACCTGGTGTGATGATTCATCCAAACCCACTGCCAAGACAATCGACCTGTGTAACAACCCCAAGACCAAAGAGCCCAAGCTGAGCGCGGCCGTCCGCATCGTGCCCGAGTGGACCAGCTACGACAGCGAGATCAAACAGCTGCTGAAACGGGTACAGGAACAGAAACCGGAGGAGTCCAACACAGGACCatcacaaacacagacaaaacatacagGGAATCAGAGGGACGAACTCTAGCACCTTCCTGATAGAAGAGGGACATGTTTGCACCTCATCCTTCAGTGCGGCCTGAACTCTGCTGCTGCACGGACACGAGCATTTCCCATTAAACTACTCTACCAGACAGTATTAAACTGAAATCTCAGCTTCACGAAGAGCGTGAGGAGACAGGAACACTGAACAAAACACGATTTTTAAGCAGATGTGAAGATATATTTCTATTTATGGATGGTGATGAGAGGCGCCTTGATTTAAACAACTTGTTTTGGTACAATAAGTGGAATTTTCCATTAAACCAAACTCACGTGACATA

Function

GO: NA

KEGG:

id description
K11718 HUGT; UDP-glucose:glycoprotein glucosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230259 lncRNA downstream 283079 25514996 ~ 25515431 (-) True G170067
TU230234 lncRNA downstream 372315 25425786 ~ 25426195 (-) True G170045
TU230231 lncRNA downstream 410044 25388090 ~ 25388466 (-) True G170042
TU230227 lncRNA downstream 411795 25386403 ~ 25386715 (-) True G170038
TU230214 lncRNA downstream 510898 25214731 ~ 25287612 (-) True G170025
TU230434 lncRNA upstream 167105 26072721 ~ 26073175 (-) True G170198
TU230446 lncRNA upstream 231159 26136775 ~ 26137154 (-) True G170209
TU230449 lncRNA upstream 232201 26137817 ~ 26138240 (-) True G170210
TU230452 lncRNA upstream 290708 26196324 ~ 26196679 (-) True G170213
TU230484 lncRNA upstream 320872 26226488 ~ 26231182 (-) False LOC103029246
XM_022680481.1 mRNA downstream 17509 25774326 ~ 25781001 (-) True LOC111194933
XM_022680479.1 mRNA downstream 43919 25731814 ~ 25754591 (-) True LOC103035604
XM_022680476.1 mRNA downstream 80308 25685067 ~ 25718202 (-) True LOC103035913
XM_007260596.3 mRNA upstream 123862 26029478 ~ 26031385 (-) True LOC103035301
XM_022680485.1 mRNA upstream 320841 26226457 ~ 26252266 (-) False LOC103029246
XM_022680484.1 mRNA upstream 320841 26226457 ~ 26252266 (-) True LOC103029246
XM_022680488.1 mRNA upstream 731960 26637576 ~ 26647990 (-) True LOC103038930
XM_007260437.3 mRNA upstream 747558 26653174 ~ 26663616 (-) True LOC103038625
TU230256 other downstream 289094 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 1474005 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 2903078 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 3440103 22338439 ~ 22358407 (-) False man1a2
TU229253 other downstream 3975472 21822713 ~ 21823038 (-) True G169286
TU230949 other upstream 1995178 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 2780434 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 5994732 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 6852902 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 7268437 33174053 ~ 33176284 (-) True G171553

Expression Profile