RNA id: XM_022680484.1


Basic Information

Item Value
RNA id XM_022680484.1
length 2876
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC103029246
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 26226457 ~ 26252266 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttatatggcGGAGTAGAGGAGAGGGAGGGGAAGGCACGGCGATGCTTTTCTCTGAGTTTAGGAGGAAACCTGTTGAATAAAGTCTGTTTTCTGGTGCTGGAGGGATGCGGGGGAGTTCTGGCGACATATTCTCTCCCGGTAAGACCCCAGACACTCCACTGTAAAACCTCCCCTCTTCTGGAGATCTGTACACTAcatgttggaacattgctgtgaagattgGATCGAGTTCAGCAAGAAGAGCATTCATGAGTTCAGGTATAGCTATTGTCATGGCGACCAGTGCAGTTCCTAGCGACAACCTCCCCACGTACAagctggtggtggtgggagACGGCGGCGTGGGCAAGAGTGCTCTCACCATTCAGTTTTTCCAGAAGATCTTCGTACCCGACTACGATCCCACAATCGAGGACTCCTACCTGAAGCACACAGAGATCGATGGACAGTGGGCTATTTTGGACGTTCTGGACACGGCAGGGCAGGAGGAGTTCAGTGCCATGCGAGAGCAGTACATGAGGACAGGCGACGGCTTCCTTATCGTGTTTTCCGTCACAGACAAGGCCAGCTTCGAGCATGTGGACCGCTTCCACCAGCTCATCCTCAGGGTGAAAGATCGAGAGTCCTTCCCCATGGTCCTGGTGGCAAACAAAGTAGATTTGGTACATCTGAGGAAGGTGACGAGTGACCAGGGCTGTGAGATGGCTGCCAAACACAGTATTACCTACATTGAGACGAGTGCCAAGGACCCCCCGATGAATGTGGACAAAGCCTTTCATGAACTGGTCCGAGTAATTAGGCAGGAGATTCCAGAGAGGAgtttgaagaagaagaagaagatgaagtgGCGTGGAGACCGAGCTGCTACCTCTCCCAGACTCCGCTGCAGTATTTTGTGATGCtctcctcctccagcttctGGTTAAGCCAGAAAGAGGTGGTTTCTCGATGGTTCTCATTCTTCGTCTCAGATCACTGCGCTCAGCAGGGGGAGTGCTACAGAACCGGCAGGCCCGAGTCAGGCCGGGCTGGGTGGGGTCGGGCAGGGCCGGGCTGGACCGGACCAGCAGTGACAGTTAAATAAGGCTGACAGAGACGTTTGCACTGATGCAGAGATCACCACAGGACTTTGTACTGATGTATGGTGATTTAGTGTCTCCTGGTGGTCACAAGTGTAAATGGCATTGGCTAATAACTTCTTCCAAGGGGCTCAGTGTGAGCGGACAGAACTTGTCCTTATTGGTTTTAGATATCGGAGGGATCGCAGTCACCTGAACTgttgtttgtattaaaaacgTTTTTGGGGCTTCAGGAATTTAAATACCTCCTCAATATGGCCTTTACTGCACAAGTATTACACAAATAGAATTTGTCCCATTGCACTACTAAATGAATCTATTTTGCACTTTTACTTTGTGTCAAATATGAAATTATGGGATCACAGTATTAAAGAATTCTGACTTTGATGAAGGGTTTAGTTGTAAAGGtagaattgttttattattatttcttgcACTTCTAATTTGCACTCATAGTGGGACTGCTGacaacattcatttttattgcctttatatacatttttgtaaaacttTTTCTGCCTATTTTAATCAAACACCAAAACGTTCTCCACTGGCCAACATGAAGTTTTTTACATATCTGCTAAAGATCTGTATGTGGCGGTTTAAAAGCATTGCTTGTTCATCTTTTTTTCTAGGCTTGGCTTTTTAAGACAATTCCTATTACACCAATGTGCCTGCACAGTGCTGTGTCTTTTACCTCTGTcctattgtaatatttaaatgtttcagaccATCCAGTTAATGATCATTCCATGAATTGTAGATAAACTAAGCCCAAGCTGAACACCCATGATCTGCTGATGGAATCACATACGCAATTAGGATTACTTTAGCAGAACTTTAGCCAACTTTCACTGAGGAATACACATAAAACTTTACTTTGGGAAACAGAAGCTGCATCGACTTTTTGGCTCAGATGTGTCTGGAAAGAACTATTACATTGTGGTCAGACGAATCAGTATTACAGTACTTTTTGGACTTTGGGTGCTCCAGACCAAACAGGAATAGGACCATCCGGACTGTAATCAGCAATGTGTCTAAAAGCCAGGGTCTGTCATGGAATGGCGCTGTGTTAGTAGTACACTTCTGTGATGGCAGCATAAATGTTAGAAATGTATATTGAGATCTTATAGCAACAAGTTCTGCCTTTAAGGCAACACCTTTTGTAGGGACAGCCATGTCCCATTTTTCCCAAGACCATGCAGAATGAACACGAataggaccatccagactgttatcagcaatgTGTCTAAAAGCCAGAGTCTGTCATGGTATGGGGCTGTGTTAGTGGCATCCTTTTGTGATGGCAGCATAAATAGAAGAAAAGTCGAAAAGTATATTGAGCTCTTATGGaaacatatgctgccttcaaggTAACACCATTTCTAAGGACAGCCATGTCCCATTTTTCCCAAGACCATGCAGAATcatatgctgcacacattacaaagccGTAATCGTAGAAGAAGAGGATACAGGCACTGGACTAGTCTATCTCTAACAGAGAACCCAATACTGTAGCACACCTTAATACAAAGTTTGCAggaaaatgggacaaaataaccTGAAGTacttcattttttgtttgtattatcTGTGCCAAAACATCTTCGAAGTGTTTTGAGAAGGAATGGAACATTGCAAAGTATTAATTGCCTTATTGTGCCAGTTTGTGTTGAAGTCCTGAAATACAGGAATGAATGTATATTAACACATGAAATGAAGTTGACCAAACAAACCATAAAATGTACTCATGCTGTCTGcaagtaaataaaaatcattgtaaatataagaaa

Function

GO: NA

KEGG:

id description
K07831 MRAS; Ras-related protein M-Ras

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230452 lncRNA downstream 29778 26196324 ~ 26196679 (-) True G170213
TU230449 lncRNA downstream 88217 26137817 ~ 26138240 (-) True G170210
TU230446 lncRNA downstream 89303 26136775 ~ 26137154 (-) True G170209
TU230434 lncRNA downstream 153282 26072721 ~ 26073175 (-) True G170198
TU230400 lncRNA downstream 357356 25866117 ~ 25869101 (-) True G170170
TU230490 lncRNA upstream 59510 26311776 ~ 26320118 (-) True G170245
TU230494 lncRNA upstream 75677 26327943 ~ 26330624 (-) True G170248
TU230506 lncRNA upstream 89921 26342187 ~ 26360431 (-) True G170257
TU230509 lncRNA upstream 99160 26351426 ~ 26361497 (-) True G170260
TU230510 lncRNA upstream 129906 26382172 ~ 26387033 (-) True G170261
XM_007260596.3 mRNA downstream 195072 26029478 ~ 26031385 (-) True LOC103035301
XM_022680482.1 mRNA downstream 320841 25798510 ~ 25905616 (-) True LOC103030841
XM_022680481.1 mRNA downstream 445456 25774326 ~ 25781001 (-) True LOC111194933
XM_022680479.1 mRNA downstream 471866 25731814 ~ 25754591 (-) True LOC103035604
XM_022680478.1 mRNA downstream 512586 25685067 ~ 25713871 (-) False LOC103035913
XM_022680488.1 mRNA upstream 385310 26637576 ~ 26647990 (-) True LOC103038930
XM_007260437.3 mRNA upstream 400908 26653174 ~ 26663616 (-) True LOC103038625
XM_007260436.3 mRNA upstream 411761 26664027 ~ 26670958 (-) True LOC103038316
XM_007260429.3 mRNA upstream 810926 27063192 ~ 27070005 (-) True fzd5
XM_007260427.3 mRNA upstream 835133 27087399 ~ 27141209 (-) False plekhm3
TU230416 other downstream 320975 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 717041 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 1901952 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 3331025 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 3868050 22338439 ~ 22358407 (-) False man1a2
TU230949 other upstream 1648528 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 2433784 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 5648082 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 6506252 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 6921787 33174053 ~ 33176284 (-) True G171553

Expression Profile