RNA id: XM_007260436.3


Basic Information

Item Value
RNA id XM_007260436.3
length 1175
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC103038316
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 26664027 ~ 26670958 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAgccacagtctgagcagaacAAGAGCTTGTGCGCCCGGTTGTTGCTGAGTCACTCTTGCAGGTTAAGGGACACAGTTGAGACAACCATGAGCTTCAGGTTGTTTGAGGAGAAACAACATGCTTCTATTTATCAGAAGTATCGCATGGTTCCACCTGACGAAGTGAAGGAACTTATTCTGCAGTACCTGGACAAGAAGaAAGGACCTCCCTTTGAGCTGGTGGTGGATCTGGGGTGCGGTACAGGGCAGAACACTCGTCTGCTCTCCCCTCACTTCCAGAAGGTGGTGGGCATCGACATCAGTGAAAGCCAGCTAGAAGAGGCCAGAGCTGTTCCAGGGTTTACCAACCTCAGCTACAGAACAGGAACAGCAGAGCAGCTCCCGTTTCCCGATGGCTCTGTGGATCTGCTGACCGCAGCATCTGCTGCCCACTGGTTTGATCCTCAGGGGTTCCTGAAGGAGGCGTCTCGTGTTCTGAAGCCTCATGGCTGCATGGCTCTCCTGGGCTACACAGATCAGTTCTACCTGAATTACGGCTCCTGTGGTGATAAACTCGACTCTAtctattcagagGTGATTAAGGCACTCCTACCGTACACCAGCAGTCAGATAGCAGTGGCCAACAGTAAACTACAGGACTTATATGAAGCCATACCGTTCCCTGATAAAGAGAGAGTTGAAAGCATACCTGTGAAGCTGCAGATGAGCGTCAGGGCTGCAATTGGCCTTGTGGAGTCTTTCTCCATGTACCAGACCTTCCAGAGGGCCGAGCCTCAAGCTGCAGCTGCTCTGCTAAAGTCAACTACCACACGGTTGCTAAAGGAAATGGGGGTCTCTTCTGTGGACACTAAGCTAGATGTTACAATGCATTATTACTGTGTGCTGGCATGTAAACCACAGTAACATCAATCTCAATCTGCCCTTTATGTAGTCTGATTTCATATATTAATTAaagaacagtaaacagtaaagtacatttttttgcCTTATTAGCAGAGTGTTGTGATTGGGGCAGCCCACGTGTGAGGGTCATCCGCAGGTTATCACGCCCAAAAAAgaatgttgccagattgggaGAAACACCCAAAGTACGGGGTGCATAATTCAGACACAgaatttttaaaacagtcattCAGTTTGGGATTGGTGGgaaataaacatattatttacAGTT

Function

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG:

id description
ko04978 Mineral absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230567 lncRNA downstream 60397 26563644 ~ 26603630 (-) True G170308
TU230536 lncRNA downstream 170280 26493532 ~ 26493747 (-) True G170280
TU230532 lncRNA downstream 188964 26474786 ~ 26475063 (-) True G170276
TU230510 lncRNA downstream 276994 26382172 ~ 26387033 (-) True G170261
TU230509 lncRNA downstream 302530 26351426 ~ 26361497 (-) True G170260
TU230615 lncRNA upstream 16306 26687264 ~ 26688282 (-) True G170349
TU230616 lncRNA upstream 47554 26718512 ~ 26718772 (-) True G170350
TU230620 lncRNA upstream 139943 26810901 ~ 26811119 (-) True G170353
TU230783 lncRNA upstream 295997 26966955 ~ 26972123 (-) True G170485
TU230798 lncRNA upstream 361184 27032142 ~ 27034606 (-) True G170499
XM_007260437.3 mRNA downstream 411 26653174 ~ 26663616 (-) True LOC103038625
XM_022680488.1 mRNA downstream 16037 26637576 ~ 26647990 (-) True LOC103038930
XM_022680485.1 mRNA downstream 411761 26226457 ~ 26252266 (-) False LOC103029246
XM_022680484.1 mRNA downstream 411761 26226457 ~ 26252266 (-) True LOC103029246
XM_007260596.3 mRNA downstream 632642 26029478 ~ 26031385 (-) True LOC103035301
XM_007260429.3 mRNA upstream 392234 27063192 ~ 27070005 (-) True fzd5
XM_007260427.3 mRNA upstream 416441 27087399 ~ 27141209 (-) False plekhm3
XM_015608621.2 mRNA upstream 416441 27087399 ~ 27139820 (-) True plekhm3
XM_007260428.2 mRNA upstream 430842 27101800 ~ 27141209 (-) False plekhm3
XM_007260426.3 mRNA upstream 477613 27148571 ~ 27166262 (-) True idh1
TU230416 other downstream 758545 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 1154611 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 2339522 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 3768595 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 4305620 22338439 ~ 22358407 (-) False man1a2
TU230949 other upstream 1229836 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 2015092 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 5229390 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 6087560 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 6503095 33174053 ~ 33176284 (-) True G171553

Expression Profile