RNA id: TU230510


Basic Information

Item Value
RNA id TU230510
length 4542
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G170261
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 26382172 ~ 26387033 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGATCTGAGTGTTTTACTTTCAAGAAAAACAGAACCCAAAACTTAAGAAtacactttaatattaatcactAGTCACTATGAAATGCTTTCAAACCAAGGTGAGAAAAAGAAGTGTCCTTTGGTAAGAGTTTTACTGTAAAGCAGTTAGGGATAAGGTAGTTGAAGATCATTGGTAAAAACTAAATCTGTGCAAAACTAAAATTATTCTGATAGAATGTAACAGGACAAAATATCCTAAAAACTAGACTAGAACTGCACTGAAATGGATGGAAATAAACTCAAAtgaaaaatcacttaaattaaaaaacatacaaatgcaAGATGGATTGATTGAATCGCGGCCCAGAGCACAATGACCCAACATCACCTGCCAAACACCAACATTCCAGTGCTGACCATTGTCTCTGGACTGTTTAGAacaattctagaacagtgtgaatactGGGAGTAGTATTCTATAATAGTGTGAATATTGGGAGTATTCCAGAACATTGTAAATATGAATATGTGTAGTATTCTAGTATCAATAGGGTGAATATTCTAGAACAgggatattttaaaatattatatgggGGAGTATTCTAGAAGTGTGAATATCGGGAGTATTCTAGAACACCATGAAGGGGAGGGACATTTCAGAACAGTGTAAATACTAGAagtattctagaacagtgtgaatactTGAGAGTATTCTTGAACACTATAAATGGGAGTAATATACcagaacagtgtaaatatttggAGTATTATAGAACAGTGATTACTGGGGTATTCTGAAAACACTAAGTATGGAAGGAATTttccagaacattttaaatattgggAGTATTCTAGAACATTGAAAAGGGGAGGGATATTCTAGAACAGTGCATTCTAGAAGAGTGTGAACACTGggagaattattattaatagtgtgAATAAGGGGAATATTCTAGATCAGTGTGAATTATAGGTAGAATTCTAGAGCACTATGAATGTGATgaatattctagaacagtgtggatATTGCTGGTATTCTAGAGCAGTGCAAATGGAAAAGTGTAAATGTTTTAGAATACTCCCCCATTTTTTCAGAAATGTTAATATTGGGAGTATTTTTGAATGAACAGTGTGAATTGGGGAATATTCTAGAACAATgtaaatgctaaaaaaacaaTTGGGAATATTCTATACTAGTGTGCATGCTGGAAACATGCTGTTACAGTGCAAACGTTGGAAGTATtcaagaacagtgtgaatggaaGAGGTATTTCTCGTAGAGTGTGAAAGGAAGTTAATGTGGAGAATATTCACAAACAATATAATTAAGGGGAACATTCTAGAATTCCATACTCAAATTCTAAGAACAATAGAGCAGTTTGAATGGGCACAACCATCACACAGGCATGGACAACAACTCAGTGTTTGGGTTTGCTGGTGTTTGTTGTGTAGAGGATTCTGAATCAGTGTGCTTTGAGTTCTAGATTAGATCACTTTGTAGAACAGAACAAGCTCTATCAGTAATAAAATCCACTTTCAGTGTAAAGAGGAGGCTGAGTACAGGTCGAGTCACTTCTTTAGAAACTGTGAGGCAGCAGTAACAGTAAGGTGTCTCTGACAGCAGGCAGTACTCTCCTCAGCTGTCTGCTGTAAATCAGCCATCGTTCGTTATCTTGTCCACGCCCACGGCCGTGCTCTGGACAGTCTCAATCACGGGCTGGACGCTGAAGACCAAAGCAGGGTCTGTGGTTAAAGCCATGCAGGGGAACGCTCGAGCTCAGGCAGGTTCACTTCAGACTTGGTCAGAGAACACTGTGTCTTCCTGATCCAAGAGGAATGTGAGGTGGGCAGGGGTCCAGGCTGAAGGGGTGGAGCCAAACAGTCTCGCCAGTTGGGGAGGATGGGAGGCCTGAGTGGGATGGGTTTTGGAGGAGTTAGGGAGGGTGTAGTGAAGAGGAGATGAAGATGATTGCTGAGAGGAATGCTGGACAGTCGGGGGAGTTTTGGACAGGACAGGAGGCAGggagaaatgaaaaaaagaatagaatagaagtgGAAGGATTTTTTAGGAAATGAAGAAGAGCTGGACATGCTGAAAGATCAAAGAATGACCATCACTTGTCGTGATCTGGCATGAAGCTGCCCtgatactttctttcttttaagtaATATTCGTAGCAGATTATAATTCTAAAGGTTTTAAAGGGTTATATTCTGTTCTGTATGGTATTGAAAAGGGTTCTATGGAACAAACACCAAAACATTTGAGAATTATCAATGTAGAGTAGAACTGTTTCAGCAGCAAGGATGATGCAATCATTTGTTGTGGTTCTATACAGAACCATACACTTCAACAGTAGATCACTGTAGAACCACGTTTTAAGGGTATACTAATGGTATACTGAAATTTTAGGtatgataaaaagagagaaaattgaCCAATTATGACCTTTTGATCAAAAGCATCAAAATGACTAGTTTTGACCTAGGTTATTAAAGctacaatacatattaaaaaatgagGTGCAGGATGTAAGGATGTAAGGATGTAAGGTAACTTCACAGAGCACAGGGAAGTGATGAAGAACAGTGTGAAGAAACGTCCAGAGCAAATATTTTCAATAAGACAAAACATGTCAGCAAACAATGGCCAAAATACAGTGTATGCCATTTGCTTACCAGCCTTATTAGTTTAGATAAGGATTTGTGGGGGGCATCTGATTCACATTAGTGGTGCATGCTCAGAATTACTACTGTTAGTCAGCTCCCACGCAAAGAAAAGAAACCTGCTGACCAAGCAAGATACAGAAAAAGAGGCTTGAGATTCACTGCAGGGTTTCCCCAAACCAGTCTTTAAGAACCCAGCAAAGTCGGCAGAAACTGACAGAAAAACCCTGACAAACAGAACAGGAAACTATGAAGCAGCCACAGCCAAATGAGTGTCAAATGAAGACTGGATTGGTAGAAAGCCCCTCAGCAccaagctgtggagcagtggaactgaaCTCTCTGGAGTGATGGAATTCCAGTAGATTCTTGGAATTACGTATCTTTCTATAACAATGTCCCTTATCTCACTTTtagcttttccaccaaaagaacttaGGTTCTTGAACCAATTCCATTTCCAAGCAGCTTTATTGGAACCGTCAAAATGTCAAATCATACGTCATTAACATAGGGCATTGTACAGTGCCGGTGCTCCTGTACAACCAGACACGTCCACAGATATGGTCACGGTTTGcgctgaagaacctagtattcttcaaTTTTACTTGCGAACAAACGTTTCTTGTTtgggaacctacttttgttggtggaaacacaGCATACCGGTTTAAAATTAGGTTCGCCAAAACGGTGCTGATTCCACGTTGGTGGAAATGCGATATCTCTGATGATACTACCAGCACTGGATTATGGAGCACTGGGATGGACTTTATGCAAAGACTCAACTGATCGCCCAACATAAGTCCCCGACCTCAGTCCCAGATAATACCATCAGCACTGATCTCTAAATCAGTGGAACAGCTTTCTCTGAAattatggagctccatccaatacattTGAGATGATCTGAAGTGCCAAAGCTCAACTGATCACCCAACACTGATTCCACTCCCATTGCATtgggctgtggagcagtgtACCTGAGTTCTCTGTTGTAGTCCCATCCTGACATCATTCCTTGAACAGACAATCAAAATTGGGCTGCTGAGCACCGAAATCGAGTTATCTGGAGAATAGAGCTCAATTCTTTGAGAATATCTGGATTATCAAAGGTTTACTGATCACCCAATATTAGTACCAGACCTCACATCCGGTGGAGACTACCACACtgggctgtggagcagtggaactgtattATTTGGAGTAATGGAACTCAAGGTAAGCTTTGGAAAGCACTGGACGATCACCCAACATTACCTTCTGACTTGCACCTTATGTGGCTTCATGCAACCTCATCCAATACCTCTAGGATGGACTGCAGGCCAAAGCTCAACTGATCACCCAACATTAGTCTCTGTGGAGCTCATTAAATAAATTTGCCCGATCCCTCCAATTCAACCTTCATGGAATTGTCATAAACAGCTCTGCTGTGGTTGCCTTTAGTTGTTTTGTGATTGGTTTACATGGGCCATACTAGTCCCTGAATCATTTTCTAAACTGGCATGATGTTAACACTTTCATGGATGCTTCTGTGTTCCTGTCTGGTGATTTTGTTATGTACCGACATTAGCCTAGTTTAAGAAAGAGCTGAAGGAAAGAGAATTTCACAAAGAGATTGCAAAGAGTCCAAAGCTTGTAAGAAAGCAGAACAAAATCTAAACTAAGCCAATTTACCATCCATGATTCGGTACATCAAGAGAGTTCACCACATCAGCTGATTGCATCAGTTTGGAAGAGCACCAAGAGAGAGCTGTAAAAGTAGCCTTGCCCAGCTGGAAGAGAACCAATCATGAGAGACCACCCCAGCAAAAGACATACAACTGATTGGAGGCAGCATCCCAGCAGGCGTTAGAAATGATAAGTAACTACCTTACCTTATGACAAGGGCGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230509 lncRNA downstream 20675 26351426 ~ 26361497 (-) True G170260
TU230506 lncRNA downstream 21741 26342187 ~ 26360431 (-) True G170257
TU230494 lncRNA downstream 51548 26327943 ~ 26330624 (-) True G170248
TU230490 lncRNA downstream 62054 26311776 ~ 26320118 (-) True G170245
TU230484 lncRNA downstream 150990 26226488 ~ 26231182 (-) False LOC103029246
TU230532 lncRNA upstream 87753 26474786 ~ 26475063 (-) True G170276
TU230536 lncRNA upstream 106499 26493532 ~ 26493747 (-) True G170280
TU230567 lncRNA upstream 176611 26563644 ~ 26603630 (-) True G170308
TU230615 lncRNA upstream 300231 26687264 ~ 26688282 (-) True G170349
TU230616 lncRNA upstream 331479 26718512 ~ 26718772 (-) True G170350
XM_022680485.1 mRNA downstream 129906 26226457 ~ 26252266 (-) False LOC103029246
XM_022680484.1 mRNA downstream 129906 26226457 ~ 26252266 (-) True LOC103029246
XM_007260596.3 mRNA downstream 350787 26029478 ~ 26031385 (-) True LOC103035301
XM_022680482.1 mRNA downstream 476556 25798510 ~ 25905616 (-) True LOC103030841
XM_022680481.1 mRNA downstream 601171 25774326 ~ 25781001 (-) True LOC111194933
XM_022680488.1 mRNA upstream 250543 26637576 ~ 26647990 (-) True LOC103038930
XM_007260437.3 mRNA upstream 266141 26653174 ~ 26663616 (-) True LOC103038625
XM_007260436.3 mRNA upstream 276994 26664027 ~ 26670958 (-) True LOC103038316
XM_007260429.3 mRNA upstream 676159 27063192 ~ 27070005 (-) True fzd5
XM_007260427.3 mRNA upstream 700366 27087399 ~ 27141209 (-) False plekhm3
TU230416 other downstream 476690 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 872756 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 2057667 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 3486740 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 4023765 22338439 ~ 22358407 (-) False man1a2
TU230949 other upstream 1513761 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 2299017 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 5513315 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 6371485 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 6787020 33174053 ~ 33176284 (-) True G171553

Expression Profile