RNA id: TU230615


Basic Information

Item Value
RNA id TU230615
length 1019
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G170349
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 26687264 ~ 26688282 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCCTTTTCCAACAGTGCCATCACATGGCCATTCGCGCAAATGCACACCATACCCCACgtaaaacactgtacttcaCAAAGCTGTGGACATCATTTCAAACATGCACTAGTAGCAAAACGTAGATCATCACATTGAATCTCATAACAGTCATATATATTCCACGCCGTATATCAGCTCTGCGCAACCTCCCCACAACACCACCGCAAGCCACGAGCCCCGCTTCCCATTCCCATTCCCACTCAATCCCACGCAGCGCAGCACTGCCACCTCCTGCTCACACGCGAAACAGGATTCAATAAAAAAGcattacaaaaaacatttacagtctATATTTCTGCTTTTATCACACCAGAAAAGCCTTTACAGCCATACATATTACGTCAGGGAAATCTCAGCAGCATCTGACACCAGTTCCCTCGCGGATAAATAAATCCGGCTGCTTGTGTTTCACTGAGACATAGATTTATCTCAGCCTTGAACACTAAAACTCAGCAGAGCGGGCCTTTAAAAGCAGTTCATAACCAGCGCTGGAGGGTCTCTTAAAGTTTATTCAAGTGTGAGTCACTGGCACACAAAACCAGACCACAATATTGAGACATAAAATTTCATTAAACCTTTCTATTGTGTACTGGTCTTTTTGCGAATATCAGTTTACAGGATTCACAATcattacaataattacataccagtacacaataaacacatgcatacatacagctctggaaaaaaataaataaataggagaccacttaaaaaagagtttctttgattttaccaatttaaaaaacTCAAGATAAAGATGGttgatcaaaccaagctgaactgcttgaatttttggcaccaggagtggtgtaaagttatccaaaagcagtgtgtaagactggtggagaagaacatgccaagacgcatggaAACTAGAACTAGAACTTATGTtcttacataatttttaagctttttacgttttcaataataatatacaatgtaGGAAGTAATACAAATTACGACCAAATATTAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230567 lncRNA downstream 83634 26563644 ~ 26603630 (-) True G170308
TU230536 lncRNA downstream 193517 26493532 ~ 26493747 (-) True G170280
TU230532 lncRNA downstream 212201 26474786 ~ 26475063 (-) True G170276
TU230510 lncRNA downstream 300231 26382172 ~ 26387033 (-) True G170261
TU230509 lncRNA downstream 325767 26351426 ~ 26361497 (-) True G170260
TU230616 lncRNA upstream 30230 26718512 ~ 26718772 (-) True G170350
TU230620 lncRNA upstream 122619 26810901 ~ 26811119 (-) True G170353
TU230783 lncRNA upstream 278673 26966955 ~ 26972123 (-) True G170485
TU230798 lncRNA upstream 343860 27032142 ~ 27034606 (-) True G170499
TU230800 lncRNA upstream 359753 27048035 ~ 27052607 (-) True G170501
XM_007260436.3 mRNA downstream 16306 26664027 ~ 26670958 (-) True LOC103038316
XM_007260437.3 mRNA downstream 23648 26653174 ~ 26663616 (-) True LOC103038625
XM_022680488.1 mRNA downstream 39274 26637576 ~ 26647990 (-) True LOC103038930
XM_022680485.1 mRNA downstream 434998 26226457 ~ 26252266 (-) False LOC103029246
XM_022680484.1 mRNA downstream 434998 26226457 ~ 26252266 (-) True LOC103029246
XM_007260429.3 mRNA upstream 374910 27063192 ~ 27070005 (-) True fzd5
XM_007260427.3 mRNA upstream 399117 27087399 ~ 27141209 (-) False plekhm3
XM_015608621.2 mRNA upstream 399117 27087399 ~ 27139820 (-) True plekhm3
XM_007260428.2 mRNA upstream 413518 27101800 ~ 27141209 (-) False plekhm3
XM_007260426.3 mRNA upstream 460289 27148571 ~ 27166262 (-) True idh1
TU230416 other downstream 781782 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 1177848 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 2362759 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 3791832 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 4328857 22338439 ~ 22358407 (-) False man1a2
TU230949 other upstream 1212512 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 1997768 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 5212066 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 6070236 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 6485771 33174053 ~ 33176284 (-) True G171553

Expression Profile