RNA id: TU230798


Basic Information

Item Value
RNA id TU230798
length 2410
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G170499
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 27032142 ~ 27034606 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTCAACACACGTCTTTTTTATGAAATAGCTGCCAAAAATGCAACAGTCATGGTAGACTAACAACATATATTTGTACCCTCTATTTACGCGTTGATGCATCAAATACAAAGACACTGAATCCATATCCATTGTGACACAATGCAAAAATAACCATAGAGATATCAAAGTTAAAAAtgatatacaaaaaaaacaagtttaaacaTGCCATATTTGCGAAGAGAGATATTAATACTTGTTATAGAGGATGATACTCATTTCAGTTCTGTATGATGAAaaaaacaaacaaacagaagaatTCAAGTCCAAGAAACGTAAAAATCTTgaccatgtttaaccatttcagATTAAATAGCTAATTAATCTCCAAACTGAGCCTCACCACAAAGGTTTGGTTGTGCAAAGATAGGAATCACTGTGGTGGGCCTGCGAGAGCAGCCTGAGCCAGGTTTACAGCCTTGATTTCAGCAATAATGAGTTCCACAAACTCAACGTCTGGATCCCCTGCACCTTGTGACTTGCTCATCTTGTAGAAAATGTGCAGAAACTAGATACTTAACGGAAGTGCATTAAATCGCACAATCCTGCTGTACTGTGGTGGTTAAAACACTCAGTACTGTGCTGGCAACAGAATCATCTAATTTAAATAACCGTGTAATAAATAACTACAAATTATGGTCGTTTTGAGATGGTCCCTAACTCTAAGCACAGAGACAGTGCAGGAGCTGAagcttaaaaaacatatatacatacatacatgtgaAAAATTCAATGATTAGTTGTGACATTAGTCTGTTTTCAGCTTTATGTTGGTGTAACTAATCTAGTAATAATGAACAGAAATGCTATacctctttattatgcagtggtCTCTGTAGcagcttagcatagcttagcttCACTGTACTTGACTAAAATACATATTGTCCTCTATTTTGTAGATCTGTGTTCAGCTCAACACAGCTGCATTTCAAATGTAGTAAAGCAGCTATAGAATACACAGCATGGAGTTTTGGTCTGCCTTTTTAAATATTCCTTCTATATGCAGATACTAGCTATCATACTATTGGTCTTCATAGCTGCTTAGAATAGCTTAGCTTTGCTATACAGGAGCTTAAACACAACTATTTATTTTGTGAAAGTCAACGTGTGAAATCTGAGGCTCGGttctgtttttaacattttcaagcatgacatttaaatatttagttttgggaatgctacctttaatattttaatgatattagTAGCCTATAAATCTATCTGGGAACGTTGGGTGAGATACGTTTTAATAACACTGTGAAGCAAATCATTATTGTGTTACACATTTTCAGAATATGAAACgttatttctgtaacattacaggctaATCCCCCTGATCATGATTGCTTATCATTTTTATAGCATTCTCTGTTATTGAGTTAGGTTAATGTTATGTCAGGTTCCAGACCAGGGTTCCATTTCCTGACTGGGCAAACACACCACTTCTTCGACCTATGCTGGTTTCTGTATCTGATTAGCTTAGCGTAGCTTAGCTTTAGTGTGAAAGAGCGGAAACATAACGCTTTTATTCTGAGAGTTGATGTGTGAAACCAGATGCACAGACGCACTGTACTGTGAAAACATCCAAAAATATACAAACTTTACCTCAGACAGCTTTTTGTAGGCATACTGTCTTGAAGCAATTCATATATTTAGCTTAGCTCAAATGCACATTCTAGCTATCATAAACAAATTGGTGGTTGAGTTTTACTGTACTCAGGACAGATTTAATGcattaattggttaattgaGTTAGGTTAGTATAGTGCAGTGAAAACACCACTTCCTCTGTGTTCCTATCCCTGACTGGGCAGCTTAGCTCAAAAGCACATTCAGCTAGGTTGTCTATATTTTACCTGCCactgttttaatgtattaatttagtTGATTAAGTAGCTTAGTGGGTAGATTCACCACCCGCCTTGTTCCCTTACCTAACTgggcttagcttagcttaactgtACAAGCgctaacagtttttttttttatgatagtAGATGTGTGAATTCTGACTCTGTTTTGtgagaactatttaaaatatacactttGTAGCACAAATGGCTTTTGTGGCATGCAGCAAAACATGTATTCAGCCTAAAAGCACATTCTAGCTAGCATAAACAATTAGCACAAATGCTAACCATGCTGTTGTTCCTGTATctgcttagcttagcttgaCTGTATGAGCTCTGAATTTTAATTTCCTaaatttctcttttcttctcaaaGAGGGTCCTAAAATCTATACATTTTACCTCAGACGGTTAGCATTACCCAAGTTTTTATACTAGTGGTTAAGTTTTTACTAAACCAAGTTTATTACTAAAGCAGCCTGAAACAGGAGCACCGGAGCACTttcttcaccaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230783 lncRNA downstream 60019 26966955 ~ 26972123 (-) True G170485
TU230620 lncRNA downstream 221023 26810901 ~ 26811119 (-) True G170353
TU230616 lncRNA downstream 313370 26718512 ~ 26718772 (-) True G170350
TU230615 lncRNA downstream 343860 26687264 ~ 26688282 (-) True G170349
TU230567 lncRNA downstream 428512 26563644 ~ 26603630 (-) True G170308
TU230800 lncRNA upstream 13429 27048035 ~ 27052607 (-) True G170501
TU230808 lncRNA upstream 26398 27061004 ~ 27144709 (-) True G170506
TU230813 lncRNA upstream 43933 27078539 ~ 27093867 (-) True G170508
XR_002651380.1 lncRNA upstream 343928 27378534 ~ 27381514 (-) True LOC111194934
TU230859 lncRNA upstream 438596 27473202 ~ 27476135 (-) True G170545
XM_007260436.3 mRNA downstream 361184 26664027 ~ 26670958 (-) True LOC103038316
XM_007260437.3 mRNA downstream 368526 26653174 ~ 26663616 (-) True LOC103038625
XM_022680488.1 mRNA downstream 384152 26637576 ~ 26647990 (-) True LOC103038930
XM_022680485.1 mRNA downstream 779876 26226457 ~ 26252266 (-) False LOC103029246
XM_007260429.3 mRNA upstream 28586 27063192 ~ 27070005 (-) True fzd5
XM_007260427.3 mRNA upstream 52793 27087399 ~ 27141209 (-) False plekhm3
XM_015608621.2 mRNA upstream 52793 27087399 ~ 27139820 (-) True plekhm3
XM_007260428.2 mRNA upstream 67194 27101800 ~ 27141209 (-) False plekhm3
XM_007260426.3 mRNA upstream 113965 27148571 ~ 27166262 (-) True idh1
TU230416 other downstream 1126660 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 1522726 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 2707637 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 4136710 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 4673735 22338439 ~ 22358407 (-) False man1a2
TU230949 other upstream 866188 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 1651444 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 4865742 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 5723912 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 6139447 33174053 ~ 33176284 (-) True G171553

Expression Profile