RNA id: TU230859


Basic Information

Item Value
RNA id TU230859
length 597
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G170545
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 27473202 ~ 27476135 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttaaaaatagcctcgttactcttTATTTCGGCTTGATTTGGCCCGGCtggtcaacataaaaaaaaacacaaatcgcGCCATCAGGAAAGCTTGTGATTGGATAACAAGTATAAACATAAAAGATCGTCTATTGGTTTTTATTTGCACGTCACGTCAAACTCCACAAGAACTCAACAGAGGAGTGTAGCCTAGCCTATAGAAGAGACTCAAGGAGATGTCTCACTCTAAACTGAACACCAGCGAGAAAGTCCCTAATTATGCATCATCTCCAGCTGCAGCTAGTAGCTCTGCGGAAGACCAGCCAAACCCACATCCCTGGCCATACCTGGAAGAATTTTTTGGAATGATTGGAAGCAAAAATAACTCTTTTCGAATGCGCTGCAAGCTCTGCACACCCAAGCACCACGAACTACTGGCTTTCAAGAATTCTCCATCTAATCTGAAAAAGCATATTGAGGTAAGCTGATATtactacaatatattgtattaaccTACTGATGCACTAATGGTGAATTTGCAATGGTTCTATGGCTTGGTACATGCCAAATACATGCCAAGGTTTGCTTGCTAAGTCTAGGCTATTAAACCCTTTTCgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651380.1 lncRNA downstream 91688 27378534 ~ 27381514 (-) True LOC111194934
TU230808 lncRNA downstream 328493 27061004 ~ 27144709 (-) True G170506
TU230813 lncRNA downstream 379335 27078539 ~ 27093867 (-) True G170508
TU230800 lncRNA downstream 420595 27048035 ~ 27052607 (-) True G170501
TU230798 lncRNA downstream 438596 27032142 ~ 27034606 (-) True G170499
TU230862 lncRNA upstream 3766 27479901 ~ 27480422 (-) True G170548
TU230868 lncRNA upstream 19963 27496098 ~ 27497639 (-) True G170549
XR_002651381.1 lncRNA upstream 141552 27617687 ~ 27620787 (-) True LOC111194936
TU230881 lncRNA upstream 141610 27617745 ~ 27620783 (-) False LOC111194936
TU230907 lncRNA upstream 369837 27845972 ~ 27851191 (-) True G170582
XM_022680492.1 mRNA downstream 1832 27470248 ~ 27471370 (-) True LOC111194935
XM_007260422.3 mRNA downstream 9249 27448518 ~ 27463953 (-) True LOC103034209
XM_007260423.3 mRNA downstream 37047 27406353 ~ 27436155 (-) True armc8
XM_007260424.3 mRNA downstream 37047 27413218 ~ 27436155 (-) False armc8
XM_007260426.3 mRNA downstream 306940 27148571 ~ 27166262 (-) True idh1
XM_022680493.1 mRNA upstream 8371 27484506 ~ 27495517 (-) True lcmt2
XM_015608615.2 mRNA upstream 329753 27805888 ~ 27808808 (-) True LOC107197926
XM_015608618.2 mRNA upstream 334223 27810358 ~ 27815760 (-) True slc10a2
XM_015608619.2 mRNA upstream 339674 27815809 ~ 27823363 (-) True gtpbp8
XM_015608620.2 mRNA upstream 339674 27815809 ~ 27823356 (-) False gtpbp8
TU230416 other downstream 1567720 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 1963786 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 3148697 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 4577770 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 5114795 22338439 ~ 22358407 (-) False man1a2
TU230949 other upstream 424659 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 1209915 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 4424213 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 5282383 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 5697918 33174053 ~ 33176284 (-) True G171553

Expression Profile