RNA id: XM_015608615.2


Basic Information

Item Value
RNA id XM_015608615.2
length 2921
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC107197926
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 27805888 ~ 27808808 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAAGTCCAAAGCTGGAGAACATCATCAGAAGATTTGTACAGTTTCTTTTCTCTACTCCCTGCTCGTGCTGTTGCTCGCTGTTCCATCAGCGCAGAGCTGGCTGGCTGGGAAGTGTAACGTGTATGAAGACAAAAACTACTGGTTCAAAGAGGTGAGCTGCCGTGGAGAGAAGCTCATAGCCGAATGTTTTGGAGTCACGGACATCAGAGAAGACTTAAAAGGTCTTCCCCCTAACTTGCTGAGCCTGTGTGTCGATATGGACCCTCACTTGCCAGACACTCCTTTGGACTCGGGTTTATTTTCTCGCTTTGTCTCGTTGGAGTTTCTAAACATTAATGGATGTTTCTCACAGATCCAAGCCGGAGCTTTCCAGGGTTTGTCACATCTCACTGGATTGCAGCTTTTTTCACAGTGGAGTGACAGTTCAGCTGGTTGCTGTGAATCAGCTTTCGGATCATCGGTTTTCCATCATCTTACAGCTTTGAAAATGCTGGACATTGCTCTGTATAATTTGACGACCATGGCTTTGGATGCATTCGAAGGAATCCCTGAGCTGGAGCTGTTTCAGATTCATGTGTGCATTGAAGACTGGTCAGAGGTGATCTGCCGTCTGACACGTTTAAATGTGGTTCACGAGTTCACTTTGATTGCTCACCACATAGGAATTCTTAAACATCCAGACTGCACCAAATGGAATATATCTACTGGAGGGAGTAGTTTTTTATGCAACCTTAGTAATCCAAACTTGCTCTtcaataaaatagaaaagatTGAGCAAGGAGCTTTGACGTATTTCGGAGATTTAGCGCACATCACTTTGGAAACATGGCCAGGTGTATCTGTGTTAATGTATCTGTCTTTGTTTGGGTTCAGTAAAATAACCAATCTCTCAGTAATGGGCTATCAAATCGATTTAGGAGAACTGTGCCAACTCTCGGAGAGGTATTCAGCTGAAGAAGTTGGtgttaactttgaaattatcaACACATCATCAATAGTTGCTGTAACAGGTTGTAACAAGCTTAAAGCAGTGTATCTTTATTCTATGGGCATCATTGAACACCGTTATTTGTACATGAATGATTTTCTGAGCTTCACAAACCTCTCCTCACTGGCTGTGATGTCAATTTTACTCGACCCACTCGACTTAAGGTCTATATGCCTTTCTTCCCCACTGTCAGTTCAACATTTGTCTTCACTGACGATAAACAAAAGCAATCTCACAAAATTAGTTAGTGATCAATTCACATGTTTCTTCAGTCTCGAAACGGTAGACCTGTCCTGTGACCGAATTTCTGAGATTGAAGAATTCGCCTTCAGAGGGCTTGATCAGGTACAGATCTTAGACCTTCAACAGAATATCATCAGGCACATTCGTAAGCACACATTCAGCGGCTTATTTGCTCTTACTTACCTTGATCTTCATGAAAACCCGATCTCACAAATCGAGACAAGATCATTTGAGCATTTGACCAACCTTCAGCAGTTTCTGCTGGGAGACCTAAACTTCTCACCAACAGATCCAAACATCCGGCTTAATTTAACCGATGTGTTTGGAGAAATCCCGAGTCGTCTGGGTCACCTCTTTATTAGTTCAGGCCTGAGACCAATGCAGTTGGCTATTGGCACTTACGGAACACGAGGAAAACTGAACCAAAGCCTGAGCCTGCATATTAATGGACAATATGTGATGGTTGAGGATTGTGAAAGCTCACTCCTGGAATCTGTGGTCACGCTAAGAATCAATTCGGGACAAGTCCTCTGTGGTTCTGAATTCATAGGAAGTTACACAAGGCGAGTGGAATATCTGCAATTCATATCCACATTCCCAGAAGATGTTGGGGACATCAAAGCGATCAACCAGCTGGTTCATCTTAGGAAACTGAGTTTGGAAAACATAGACTTGTCCAAGCAGCCGTATGCCGCTGTTATGTTACACAATCTGAGCAAACTGGAGAGTCTTGCCTTGACAAACTGTAGGATTGACTTTCTTGACGGGAGTCTAACTAAAGACTTGAAGTCCCTGAAACTTATGGTCTTGTCTTTAAAAGACACGGTTAAGATATTTTCCAACTTTGCTGAGAATCTATCTAGCTTGAaatatctctatttttctcatttACGACTCCATTGCAATTGTGATAATGCGTGGCTCATCTCTTGGGCTCAGAACAGCAAACTGGTGGAGGTGCACATGCGTGATCCGTCCATTAAAGAAATGGAATGCCTGGCGAAAAACGGAATCGACCATCACAAATTTGTTCAATACACCAAAGAGGATTGTTCCTTTGAGGCACAGTTTGTGCTGTTTGCCTCCACCTCCTTGTCTGTGGTGATGTTCATGCTTGCAGTGGTTTTCCACCGATTGGCAGGACCCTACGTTCTGCCACTTTATTACATCGTCCATGGATGGTTTCAGGAGGCTTTGAGGAAAGACAGTAAACGTCGTTATCGTTATGATGCTTTTGTCTCCTACAGTGGCCAGGATGAACAGTGGGTTGTGGAGAAACTCCTGCCCAACCTAGAGAATCGTGGGCCTCCATTTCTGCGCCTGTGTCTGCACACTAGAGACTTCCAGCTGGGACAGGACATTGTGGAGAACATCACTGACAGCCTTTACAGCAGCCATCGCACTCTTTGTCTGGTCAGTCGAAATTACCTTCGCAGCAACTGGTGTTCTCTGGAGCTGCAGCTGGCCACTTGCCGGCTACAGGTGGAACACAGGGATATTCTTATCCTGGTGTTTTTGGAGAAGATACCTTCAAAAATGTTGTCTGCCCACCACCGACTGGCCAGGCTTGTGAAGACCAGGACCTATCTGGCCTGGCCTCAGAAAGCTGAACTGCAGGACGAGTTCTGGGAAAGGATGTGGAATAAACTGAAGCCTAAAACAGGCAACTAGAAACGTGAGAATGGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651381.1 lncRNA downstream 185101 27617687 ~ 27620787 (-) True LOC111194936
TU230881 lncRNA downstream 185105 27617745 ~ 27620783 (-) False LOC111194936
TU230868 lncRNA downstream 308249 27496098 ~ 27497639 (-) True G170549
TU230862 lncRNA downstream 325466 27479901 ~ 27480422 (-) True G170548
TU230859 lncRNA downstream 329753 27473202 ~ 27476135 (-) True G170545
TU230907 lncRNA upstream 37164 27845972 ~ 27851191 (-) True G170582
TU230934 lncRNA upstream 53348 27862156 ~ 27862552 (-) True G170603
TU230942 lncRNA upstream 73872 27882680 ~ 27889677 (-) True G170611
TU230943 lncRNA upstream 80126 27888934 ~ 27889677 (-) False G170611
TU230998 lncRNA upstream 366527 28175335 ~ 28175654 (-) True G170657
XM_022680493.1 mRNA downstream 310371 27484506 ~ 27495517 (-) True lcmt2
XM_022680492.1 mRNA downstream 334518 27470248 ~ 27471370 (-) True LOC111194935
XM_007260422.3 mRNA downstream 341935 27448518 ~ 27463953 (-) True LOC103034209
XM_007260423.3 mRNA downstream 369733 27406353 ~ 27436155 (-) True armc8
XM_007260424.3 mRNA downstream 369733 27413218 ~ 27436155 (-) False armc8
XM_015608618.2 mRNA upstream 1550 27810358 ~ 27815760 (-) True slc10a2
XM_015608619.2 mRNA upstream 7001 27815809 ~ 27823363 (-) True gtpbp8
XM_015608620.2 mRNA upstream 7001 27815809 ~ 27823356 (-) False gtpbp8
XM_007260410.3 mRNA upstream 15531 27824339 ~ 27835473 (-) True LOC103030092
XM_007260412.3 mRNA upstream 27516 27836324 ~ 27843553 (-) True LOC103030840
TU230416 other downstream 1900406 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 2296472 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 3481383 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 4910456 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 5447481 22338439 ~ 22358407 (-) False man1a2
TU230949 other upstream 91986 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 877242 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 4091540 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 4949710 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 5365245 33174053 ~ 33176284 (-) True G171553

Expression Profile