RNA id: XM_015608620.2


Basic Information

Item Value
RNA id XM_015608620.2
length 2351
RNA type mRNA
GC content 0.46
exon number 7
gene id gtpbp8
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 27815809 ~ 27823363 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTGTTCCTGAGGGCTGTATGTCAGTGTGACACCGGTGCTGCAGCGCCGTGCTCTGTGTAAACAGTTGAtactaaaactttatttttctttatttaacagCAGATTCGGTTCTCCCGAGTGATAGAGTATATGTTCAGCTCCTAAACCTCCACATTAAATCCGCTTCACACAGCGAGCCGCGCTCAGTCTGATCCTCCGAGCTCAGCTGAGGAAGCATCATAATGTCTGCTCTGAGTGGACGGTTTCTGCTGTGTCTTCCCCCTGCTGCTGGAACACTGTCCATGCGCTGTTCTCACCAGCTGGCCACCATGCGCCACGCCTCCCTGCTGCCAGAGAAGAAGCGCCAACGTCTCCTTTTTCCATTCAGTGAGCTGGAGGCACACCTATCACGGCAGATAGACCGGGCAAAATTCCAGCTCTTCCAGCCCACGGTGGAAGATCTCAGACAAGCAGAGAAGCTTTTCACTCCCTCTCCTAAACACCACATAATGTACTCATCGTCAGCCGTCCGGACGGACCACCTGCCTGAACTCACACAGCCAGAGGTGTGTTTCATAGGCCGGAGTAATGTTGGAAAGTCCTCTCTCATCCGGGCCCTGTTCTCTCTCGCCCCAGAGGTAGAAGTGCGGGTCTCCAAAACTCCAGGGCACACAAGAAAGCTGAATTTCTTCACTGTGGGGAGAGCCTTTACACTAGTAGACATGCCTGGATATGGACACCGAGCTCCAGGTGATTTTGTGGACATGGTGGAGCCCTACCTTCAGCAGCGTCACAACCTCGTTCGGACGTTCCTGTTGGTGGATGGAGGTGCTGGGCTGCAGAAGCTTGATTTGGTTGCTGTGGAGATGTGTGAGGAATTTGGTATTCCATATGTGCTGGTGGTGACTAAAATAGACAGAACCCGGCAGGGGGCTCTGCTGGCTCTTCTGCTGCAGCTCCAAGACTTTATCAAAGATCAGACGAGCACCTGCTTCGCTCAACCTTTTCTTGTGAGTTCAGTGCAGTACTCAGGCATCCACCTTCTCAGGTGCTTCATAGCCCATGTGACGGGAAACCAACAGCTGGACTCCAAAACCACCTGAGACCCaaataaagacagaaaacacTTTTCCCACAAGTTCTTCCCACAAAGACTTCTAAAATCTGATGCTGTTCGAGACAAAGCTTGGTCTGAGGCCTGGACTGAAGCCCAGAGTAAACATGGGCTCAACTTCAGAATAAAGCCGTGACTCAACCAAAGACTCAAGCATGGACCCAAGTTTGGACTCAAGCTCAGACTGAAGCCCAGAATAAACTGTAGACAACCTCAGTGTTAAGCCCTGACTCAACTAGAGAACGAAGCATGGATTGAAGCACAGATTGTAATCCACACTGACAGTCAAGCGTAAACTCAGACTGATCCCCAGACTCAAACTTAGAATAAAGCCTTGACTTAATCACAGACTGAAGCCCAGGCCAAAGCCCAGACCATACCATAGATTCAACTTTTAACAAAAGCTCAGACATAAACCCACactaaatcatatatttaacCTCACACTGAAGGTTAAACTGAAGCTCAGCCCAATGTCCAGATCCAAACTTAGACTCAAGATCATACAGAAACCCAGACTAAAGCTTATCTATCTGACTGTGCCATTTCAGACACCCAAGCAGCCAGTATGAATGATCTGGGGCCAGCATTTCATAAACCACCAGTGTCTTAGTAAGATCATAGCTTCTGTATCCCTTCTTCACACCATTTTCTTGATTTCATGAAGTGGAGAGATTTTACCCGATACTCAGAAACTCAGAatttgttgttctctgcaggcaCTTGTAGAAAGGAGTAAGGAAGGGATTGTTCAAGGGTTTTTGGTTcgggcttaaaaaaaaaaaatccttgccCAAAACAATCCACTTTAGGCATTTTTACACAGTGGAATTCCACTGACCTTTGAGTTTGGGtctttaaactttaactttGGGCCCGTGTGTTGGTTAAAGTGTGAGAGCCTTGTTTAGTACTCATAACTTCCAAGCTTCTTGGAGTTTTACAGCTGGTGCTTTCTTTTTACTGGTCTTTTTTACGGTCCTTGTTCCTTCTGACGCACTCAGAGCCTCATAGCAGGTAGGCATCCTACCCAAGCATTTCTGAGGTAGTAGTGATGTATTAATGAtgattggtggtggtggtggtagtgatgTTGCACTGGTATACCTACAAAAAGTCCaataaaaagtgttataaaAGAGCAGGGTGGTGCAATTGCATTTATTGTCTCTAAAGTTGAAACAATGACATTTTCCCTGcttttatatgtgtatgtgtttggaCACTGACCCCATTAAAACATTTGCCGCAAGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651381.1 lncRNA downstream 195022 27617687 ~ 27620787 (-) True LOC111194936
TU230881 lncRNA downstream 195026 27617745 ~ 27620783 (-) False LOC111194936
TU230868 lncRNA downstream 318170 27496098 ~ 27497639 (-) True G170549
TU230862 lncRNA downstream 335387 27479901 ~ 27480422 (-) True G170548
TU230859 lncRNA downstream 339674 27473202 ~ 27476135 (-) True G170545
TU230907 lncRNA upstream 22616 27845972 ~ 27851191 (-) True G170582
TU230934 lncRNA upstream 38800 27862156 ~ 27862552 (-) True G170603
TU230942 lncRNA upstream 59324 27882680 ~ 27889677 (-) True G170611
TU230943 lncRNA upstream 65578 27888934 ~ 27889677 (-) False G170611
TU230998 lncRNA upstream 351979 28175335 ~ 28175654 (-) True G170657
XM_015608618.2 mRNA downstream 49 27810358 ~ 27815760 (-) True slc10a2
XM_015608615.2 mRNA downstream 7001 27805888 ~ 27808808 (-) True LOC107197926
XM_022680493.1 mRNA downstream 320292 27484506 ~ 27495517 (-) True lcmt2
XM_022680492.1 mRNA downstream 344439 27470248 ~ 27471370 (-) True LOC111194935
XM_007260422.3 mRNA downstream 351856 27448518 ~ 27463953 (-) True LOC103034209
XM_007260410.3 mRNA upstream 983 27824339 ~ 27835473 (-) True LOC103030092
XM_007260412.3 mRNA upstream 12968 27836324 ~ 27843553 (-) True LOC103030840
XM_007260403.3 mRNA upstream 66391 27889747 ~ 27894887 (-) True LOC103028198
XM_022680673.1 mRNA upstream 76835 27900191 ~ 27902850 (-) True LOC111194963
XM_022680510.1 mRNA upstream 274103 28097459 ~ 28153647 (-) False uxs1
TU230416 other downstream 1910327 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 2306393 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 3491304 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 4920377 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 5457402 22338439 ~ 22358407 (-) False man1a2
TU230949 other upstream 77438 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 862694 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 4076992 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 4935162 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 5350697 33174053 ~ 33176284 (-) True G171553

Expression Profile