RNA id: XM_007260403.3


Basic Information

Item Value
RNA id XM_007260403.3
length 3604
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC103028198
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 27889747 ~ 27894887 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTGATATATGCATATGTGCTGGAGAGTTAAAATTATTTGGCATTTCCTCTAGGTATTAACATCTTAAAATGGAACTACTACCATCTTTCCCTCAAGCAACTGCATTAAAATATATccgattcattttttttatactctcaatacaatgtaaaagaataatataatagtattaagaaatataaaaaataaactaaaacattaTAGTTAATTATGGTTTCCTGAATATATCAGCAAATGGCCATTTTAGTAATTGCTCACTAAGCTGTATGTTTTAATGAggggacaaaaaaaatctgactttttggaggtttgttttaataaacCTTCCTCTCTCTGGTCAATGTGGTCTTCAGATTAGACTTTGAAACACTACTTGAGGGGAAACATTAGCCAACAGCAGGTGAGCAGACTCGGGTGTCACATTCAGCTTCTGGACAAAAGCATATGGTAAGAAGCTGCTCTCTATATTTGAGGCTTGAGATAAACCATAGCTGATGAACATTAACAAAGGTCCCAAAAACTTACAAACCTCTGAAATAATTGTAATTCTGCCAACACTCAAATCATTTCTATTGGCCATCAGCTGCTCTCAGATCCAACAAATTCTATTTAATTGTGTGTAGCTTAATACGGTTTGTGTCGATCCATTATTAAAGCCTGGGTTTGGGTTACAGACCTGGTTGCTATGTCTACAGAATACGTCAAGCGAAACACACAGAGCACATGTGCATCACTTCAGCACAATGGACAGTGAGTTTGATCCAAATTTGAGCCCAAATCCACATGTTACAGGTATGTAAATTCTTCGCAAGTTGTGGTGTCCATCAAGGTTACTCAACGAGGGTATGGATGTAGATCAGCAGATTTGTTTGAATAGGTATCATACTGATTGTACACCAAGGACCTGGTTGCTTTGTTTGCCGTGATGTTCAAGAAGATCAATGCCGCTTTCCGCCCCAACCATGGGCACCGGTTACGGGAGGACTACCACAACGCCTGCACTGTAAAGTTGGTGCGCAGCACATCCATGCTCGTGGTTGGGGAGAAGAGTGGTGTACGACAGGACTCGACCCTGAAGAGGAGTGTTAGTGCGGTCAGTGTGGAGTCCAGCACAGCTCTGTATTACTACCACAGCCGTGAGGACAGGGTATGGCTTTACTCTCAGAACCAGAACTGTCTGGAGTATCTACAGGAACTGGTGGCACTCCGACGACAGTACACGAAGAGCATCAGTGACCTCAAACATGCAGAACGTCAAGAGACTGTCTCTGCCAAGAAGAAGCCTGCACCACCTCCACCACGGCAACCACAGCACAGAAATGTCCAGCGTTCAAGTCCAGAACCTTCAGCACCACCAATACCCAGTGAAGAGGACACACTGCAATTCTTCGATGAAGTTATTGCAAGCTGTGACTCTGAGCGCAGCAGAAAACCCCATGTGGATGATGGTCATGCAGATGTGGACTTTGTAGTGGCCACCAGTACGTGTGAACACGATCTCCACTCTAACTGGGTTTTGAGGGACCCTCGGAGGATCTCCATGGACGAATCTCGCCTAAAGCAAGCAGACCTGAGCTCAGAGCAAGGGTCTTGGAAGAAAGTGTTTGGTGGGACCACTGGCACTAGGCGTCTGCAGAGAAACCCCATCCATCTGCCCAAAGTGGTAGAGAGTGCCTTCCAGACCTTGCGCTTCAAACCCAAGCTTAAGAAGAAAGATTAGCAACTGGGActaaaagaaaatgcttttcTAGAGCGTGGCCAGTTCCAGTTAGAATTTTATCAACATGAATTCTACAGAACGTGCCTTTATTTCAGCATAGAATAGTACAGAAGATGAAACAGGACGATTCTACAGAAGATTTCAGGGATTTCAAAGGGTCTTATCATATGCCACTATCAGTTGGTGGCAGATGAGATTGGAAATGGTGGGAAAATTACACTACTTAACAGATTGAAGCAACCGTCACTGATATTGCTCAGTCAACGGCCAAGTTGTGCATTGTGGAAAAAACATGGAAGTGAGCTCTGTGATGTAATACTGGGGTCCTGGAACTCCCTCACTGGCCCAGGTTCATCAATTATCCACGAtcagtctcagtttcagcagctCTCAACAGCACTGCGCTCAGTGCCTCCACCAGGGCATGACCAAGCTGTGCAACTTTGGTTCATAGAGTTTTCCAGTCCGAGTAACAGGACTCTCTCTTACTAATAACAAACCTTGTGTAGAGATTTGTCTACTGATCTGTCAACGATCTGATTAATCAGTCAGCCGATCAAGATGTTGAGACAAGGGTTGAGAAGCACAACAGTGTCCTCAGGCCATTTCCAGGATCCCTTGTTGCTGCTGAAAATGGATCAGATGACTGAAACCTGGTAATGTTCAGTCTAATCAAACCTCAGCACCTGGTCGGGGCGCAGTCTACTGGGTTCCCTACTGACCGAGATACATTGGGATTGGTGTCCTTGTGTAAACCCATTTTTCTTGTTCCATACCATGGAAAACAgtttggaaaattaaagtacATACTTGATCATCAAAATAATCATCTGGGCTAAATTACAGCATGCCATTAGTGAGTTCAGTACAGTACGGATGTTTCCAGTTACCAAAGTGCCTTCATTTGTTAGGTTTGAGGAATaattttgaaacaaaaaaaacaagcttgaTCTTTGAAAACATAATAGGtgagtttcccagacagggagaGGAAAGGTTCAGGACTATGCTGGATTATCTCTTTCCAGGAGAGCAACCTACAAATTCATAATCGCCAAGTCTGATAGGCTTTGTTTTATCTAAACATATGATGTGTACAAGTTGATGTTGTGGTGAGATGATCTCACCTTTGTTTTTCAATAAAAGCTCACTAACAGGAACACGTCACACGTTCCCTGCTAGTTTCTTTTTCACAGAAAAGAGGAAACAGGGTTTATATTTTCTGACGAGACAGTTTAGGAAAACCCCAGAATACCACCCTGCAGGTGCCAGATGTTTTAACCTACTACCACAATTCAAAAGTATGCCATATTTTTGCTATGCTGTTGTGTGGTGTCAATAATATGGTATTGTCTGTATGCATTCAGAAGCAGAAAAGTAAAGgacttattatatattattatggtTTTATTAGATTACTTTCATCTACTTTGGCTTgaaagcagagggaagcattaagTGCTATGAAATTGGACTTGATATAtcaacacagtggaccaacaccagctgATGACATAGCTCTTCACTGTGGTAAATGTAATTGTCCAGTAGGACCAGGCACCtccccacactgccaaaaaaaacaactggtcttacataatattctaatttactaTGTCAACTTTTGGGTTTTTAGAAGTTATTAGCCttaatcatcaacattaaaataaataaatgcttgaaatggatcactctgtgtgcaatAAATCCATACAATTTAAGAGtttaatttttcaaattaaattactgaaataaaacaacttttcaATTAgattcaatctttttttttttttgatgcatcTGTACATTACCATGTGCTCTACTGGGTTAAAGTCGCTTTATActcaatattctttttttttctattttccccATAATTTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230942 lncRNA downstream 70 27882680 ~ 27889677 (-) True G170611
TU230943 lncRNA downstream 70 27888934 ~ 27889677 (-) False G170611
TU230934 lncRNA downstream 27195 27862156 ~ 27862552 (-) True G170603
TU230907 lncRNA downstream 38556 27845972 ~ 27851191 (-) True G170582
XR_002651381.1 lncRNA downstream 268960 27617687 ~ 27620787 (-) True LOC111194936
TU230998 lncRNA upstream 280448 28175335 ~ 28175654 (-) True G170657
TU230999 lncRNA upstream 284087 28178974 ~ 28179208 (-) True G170658
TU231008 lncRNA upstream 293601 28188488 ~ 28191125 (-) True G170661
TU231034 lncRNA upstream 532590 28427477 ~ 28427687 (-) True G170685
TU231273 lncRNA upstream 898385 28793272 ~ 28793875 (-) True G170858
XM_007260412.3 mRNA downstream 46194 27836324 ~ 27843553 (-) True LOC103030840
XM_007260410.3 mRNA downstream 54274 27824339 ~ 27835473 (-) True LOC103030092
XM_015608619.2 mRNA downstream 66384 27815809 ~ 27823363 (-) True gtpbp8
XM_015608620.2 mRNA downstream 66391 27815809 ~ 27823356 (-) False gtpbp8
XM_015608618.2 mRNA downstream 73987 27810358 ~ 27815760 (-) True slc10a2
XM_022680673.1 mRNA upstream 5304 27900191 ~ 27902850 (-) True LOC111194963
XM_022680510.1 mRNA upstream 202572 28097459 ~ 28153647 (-) False uxs1
XM_007227947.3 mRNA upstream 202572 28097459 ~ 28146553 (-) True uxs1
XM_022680514.1 mRNA upstream 286117 28181004 ~ 28249266 (-) False st6gal2
XM_022680512.1 mRNA upstream 286117 28181004 ~ 28249265 (-) False st6gal2
TU230416 other downstream 1984265 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 2380331 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 3565242 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 4994315 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 5531340 22338439 ~ 22358407 (-) False man1a2
TU230949 other upstream 5907 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 791163 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 4005461 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 4863631 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 5279166 33174053 ~ 33176284 (-) True G171553

Expression Profile