G170685


Basic Information

Item Value
gene id G170685
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 28427477 ~ 28427687 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU231034
GATATAGTCCTGTGatgatataatgattatatagtcctgtggcgatcagtgtagaggatggctcaggcattcttcccacagtgcattgctaaagaacatatcagatgcaatgttgatgagaatttatggccaaacagactgcagcggatggatggccaggaaggtgatggagagaggggagtgttactgtattgcatttgtgatgcttgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU231034 True 211 lncRNA 0.44 1 28427477 28427687

Neighbor

gene id symbol gene type direction distance location
pdzk1 NA coding downstream 100052 28312499 ~ 28327425 (-)
st6gal2 st6gal2 coding downstream 178211 28181004 ~ 28249266 (-)
uxs1 uxs1,LOC107688726,LOC107676432,LOC107551074 coding downstream 273830 28097459 ~ 28153647 (-)
LOC103028198 LOC103028198 coding downstream 532590 27889747 ~ 27894887 (-)
LOC103030840 spryd7,LOC108430519,LOC107600395,LOC108266652 coding downstream 583924 27836324 ~ 27843553 (-)
LOC103034135 irs2 coding upstream 634231 29061918 ~ 29079952 (-)
col4a1 col4a1,col4a5 coding upstream 741999 29169686 ~ 29235749 (-)
rab20 NA coding upstream 914610 29342297 ~ 29351215 (-)
hspbap1 hspbap1 coding upstream 983203 29410890 ~ 29431502 (-)
sema5b sema5b,sema5ba,LOC108261041,LOC107661137,LOC107660660 coding upstream 1100690 29528377 ~ 29738451 (-)
G170661 NA non-coding downstream 236352 28188488 ~ 28191125 (-)
G170658 tmtops2b,LOC108431481,LOC107559924,LOC107748531,LOC107738308 non-coding downstream 248269 28178974 ~ 28179208 (-)
G170657 tmtops2b,LOC108431481,LOC107716802,LOC107602912,LOC108266815,LOC107096900,LOC107688724,LOC107551048 non-coding downstream 251823 28175335 ~ 28175654 (-)
G170611 rnaseh2b,LOC107600410 non-coding downstream 537800 27882680 ~ 27889677 (-)
G170603 NA non-coding downstream 564925 27862156 ~ 27862552 (-)
G170858 NA non-coding upstream 365585 28793272 ~ 28793875 (-)
G170875 NA non-coding upstream 528773 28956460 ~ 28959010 (-)
G170881 NA non-coding upstream 591467 29019154 ~ 29019560 (-)
G170932 NA non-coding upstream 1122373 29550060 ~ 29566450 (-)
G170938 NA non-coding upstream 1340961 29768648 ~ 29776325 (-)
LOC111194963 NA other downstream 524578 27900191 ~ 27902899 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 2175211 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 2521861 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 2918061 25501940 ~ 25509416 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other downstream 4074569 24307650 ~ 24352908 (-)
G170854 NA other upstream 258363 28686050 ~ 28687679 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 3468145 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 4330820 32758507 ~ 32776018 (-)
G171553 NA other upstream 4746366 33174053 ~ 33176284 (-)
LOC103028031 LOC108426040 other upstream 4786635 33214322 ~ 33235878 (-)

Expression


Co-expression Network