G170858


Basic Information

Item Value
gene id G170858
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 28793272 ~ 28793875 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU231273
AAATGaagatcaggtggaaaacacaattttagttcagtgatcagggttaagaaactgctttaaactacaaacataaagtactgtactaaattctgactatccactacatctggccttgactccctatctagctaattccaaactcaagctaactcactaacacagctgcagtttattaatcacagtgggtttaatctgtgtgctgatacaagaagtgtatttttaaccagctatcagaaacatatcatcacagtttacgtgtttagcctaccgttatctttttttgagaaaaatctccgtatatccagatctgtttttaaatcagctgaagctgctgcgtccgatcccgctgctaaatctcacagcaagGGAGGGGCTTCCTCCGctcctccgcgcgccgcaaaaacagcaagctgattggctgtttctactgagaggcgggacttaatacctgaaccggctctatttatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU231273 True 471 lncRNA 0.41 2 28793272 28793875

Neighbor

gene id symbol gene type direction distance location
pdzk1 NA coding downstream 465847 28312499 ~ 28327425 (-)
st6gal2 st6gal2 coding downstream 544006 28181004 ~ 28249266 (-)
uxs1 uxs1,LOC107688726,LOC107676432,LOC107551074 coding downstream 639625 28097459 ~ 28153647 (-)
LOC103028198 LOC103028198 coding downstream 898385 27889747 ~ 27894887 (-)
LOC103030840 spryd7,LOC108430519,LOC107600395,LOC108266652 coding downstream 949719 27836324 ~ 27843553 (-)
LOC103034135 irs2 coding upstream 268043 29061918 ~ 29079952 (-)
col4a1 col4a1,col4a5 coding upstream 375811 29169686 ~ 29235749 (-)
rab20 NA coding upstream 548422 29342297 ~ 29351215 (-)
hspbap1 hspbap1 coding upstream 617015 29410890 ~ 29431502 (-)
sema5b sema5b,sema5ba,LOC108261041,LOC107661137,LOC107660660 coding upstream 734502 29528377 ~ 29738451 (-)
G170685 NA non-coding downstream 365585 28427477 ~ 28427687 (-)
G170661 NA non-coding downstream 602147 28188488 ~ 28191125 (-)
G170658 tmtops2b,LOC108431481,LOC107559924,LOC107748531,LOC107738308 non-coding downstream 614064 28178974 ~ 28179208 (-)
G170657 tmtops2b,LOC108431481,LOC107716802,LOC107602912,LOC108266815,LOC107096900,LOC107688724,LOC107551048 non-coding downstream 617618 28175335 ~ 28175654 (-)
G170611 rnaseh2b,LOC107600410 non-coding downstream 903595 27882680 ~ 27889677 (-)
G170875 NA non-coding upstream 162585 28956460 ~ 28959010 (-)
G170881 NA non-coding upstream 225279 29019154 ~ 29019560 (-)
G170932 NA non-coding upstream 756185 29550060 ~ 29566450 (-)
G170938 NA non-coding upstream 974773 29768648 ~ 29776325 (-)
G170936 NA non-coding upstream 1041160 29835035 ~ 29847918 (-)
G170854 NA other downstream 105593 28686050 ~ 28687679 (-)
LOC111194963 NA other downstream 890373 27900191 ~ 27902899 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 2541006 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 2887656 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 3283856 25501940 ~ 25509416 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 3101957 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 3964632 32758507 ~ 32776018 (-)
G171553 NA other upstream 4380178 33174053 ~ 33176284 (-)
LOC103028031 LOC108426040 other upstream 4420447 33214322 ~ 33235878 (-)
LOC103024438 LOC108426008 other upstream 4514118 33307993 ~ 33318351 (-)

Expression


Co-expression Network