col4a1 (col4a1,col4a5)


Basic Information

Item Value
gene id col4a1
gene name col4a1,col4a5
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 29169686 ~ 29235749 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680521.1
CAACGTCGATGGAAAAGATGCAGAAGAGCGTTCCGGTTAGGCTCCGGTAGAAAAGCAGACTTTCAGCTTTCAGCAAAAGCGCGGAGGAACCGGGGAACCGGTGCAGGACGTTCTGCGGAGGAGCTGTGAGTGACGGGGGAGCGCGAGACAGCAACGCGAGACAGGCGCCATGCGCTGCGCAGGTGGCACGCTGCTTCTCGCGGTGGCTGTTTTGGCCGGTTTACACCAAACTAGAGCCGAGgggTGTTCTGGATCATCATGTGGGAAGTGTGACTGCAGTGGTGTGAAAGGGTCTAAGGGTGACAGAGGATTCCCTGGCTTGCAAGGCAATATGGGATTTCCTGGTATGCAGGGGCACGAGGGCCCTCCAGGACCAGTGGGACCAAAGGGAGATATTGGAGAGCCCGGCACTCCTGGATTGAAAGGAGCTCGTGGACCTCCTGGTGCAGCTGGTTTCCCAGGAAACCCTGGTCTGCCGGGTCTCCCAGGTCAAGATGGCCCACCAGGACCAGCAGGTATTCCAGGGTGCAATGGAACAAAAGGAGAAAGAGGTGTTGATGGAATTCCAGGCATACATGGACTGCAAGGACCACCAGGTCTTCCAGGAATTCAAGGAATGAAGGGTGATCCAGGTGGTTTTATTGATGTGGTGCCAACCAAAGGAGAAAGAGGTTATGAAGGAGAACGAGGAGTGCCAGGATCACCTGGAGACCCTGGACAACAAGGACCAATCGGCCCACCTGGACCACCAGGGCCCAAAGGATATACTGGGCCTCCCGGTCCACCTGGTCCACCATATAATCTCAGCTTTATTGGTGCGAAGGGTGAGAAGGGTGAGCAAGGGCCCAGAGGACCTCCAGGACGTGCTCCAGAGCCCCCTTATGTTGAAGGACCGCCAGTATATCTACAGgGGGCTAAAGGAGACAAAGGAGACCAAGGAGAAAGAtgttcagtgtatGACACAGGAATCAAAGGTGAACCAGGACCTCAAGGACCAAGAGGAAAGCCAGGAAAGGATGGAGAACCTGGAATTAAGGGGGAAAGAGGAGATCCTGGTTTCCCTGGTGACAATGGCTATAGCGGggtaaagggagagagaggaccTCCAGGATACGGTGGCGGACCACCTGGACCCCCTGGTCCTAAAGGGTTTCCTGGACCTCAAGGAGAGATAGGCTTTCCTGGACAACCTGGAGAGCGTGGTTACCCAGGAAAAAATATTCAGGGTCCTCCAGGAGATAGAGGCTTACCTGGAGAGATCGGCCAGAAAGgagaccaaggtcctcgtggaGAGTCTCTCAGAGGACCACAGGGAGCTAATGGAACTGCTGGTCCACCTGGACCACCTGGACAATTAAGTGGAGAGTGCAAAATTGACCGAGGACCACCAGGCCCTCCTGGACCTCCTGGGCTGCAAGGAGAAATCGGACAGAAAGgtgacAGAGGAGATACGTGCACAGAATGTTCAAGTTTTGGCCCTCCAGGTTTACCTGGTGCTCCAGGACCAAAAGGAAATCAAGgtTTCCCTGGAACAGCAGGCGGGAAAGGAGATAAGGGTCAGCAAGGCCTTCCTGGATCTCCTGGAAACCCTGGTAGAGATGGTCCCCCAGGCTTGATGGGTGCTAAGGGAGCGCAGGGTGAACCTGGTGATATCTTTCTGGCTCCAAATGTGAAGGGAGAGAAGGGCACACCCGGTTTCCCTGGCACCAGAGGATTACCAGGTATAGATGGACTTCCTGGGAAAGATGGACGCCCAGGGCAACCAGGACCTAAAGGAGATCCAGCTAGAGTAGGCATTAAAGGAGATCGTGGTGAAGTTGGAGATCCAGGTCTTAGCGGCCCCCCAGGTGAGAGAGGACCCCCAGGTTTGCCAGGGATTGGTAAACCAGGAGAACCTGGAGAGAAGGGCACTCAAGGAACGGCTGGTATGCCAGGAAGACCAGGATTACCAGgtCCTAAAGGTGAGCCCGGAAAAGGTGTAAGTTCACCAGGACCTCAGGGACCACCAGGACCTCGTGGGGAGTCTGGAAGACCTGGCCTTCAAGgtgaaaGTGGTACTCCAGGTGATCAAGGATTGCCAGGATTCCCCGGGGACAAAGGTGACCCTGGCCTTCCAGGAATTGGATTTCCTGGGCCACCAGGGCCGAAAGgATACTCTGGTATTCCAGGCACTCCTGGAGTTCCTGGAGAACCTGGTCAGCCAGGGCAGGATGGTCTTCCTGGACGTCCAGGAGAACCAGGGAAAAAGGGTGAACCTGGTATTGGCCTTCGAGGACCCAAGGGTACTATTGGGCAACCAGGAGTGCCAGGGTTTCCAGGTGAGAAGGGTAATGTAGGAATGCCAGGAGTCCCTGGTCCTGAAGGACGTACTGGCCCACCTGGTCCTCAGGGTGTAAAAGGTGAACGAGGACCTCCAGGAACTCACGGTTTGGCCGGACCACCAGGACCTCCAGGACCTGGTGAGCCTGGAGCAACTGGACCAATGGGACCCCCTGGACCACCTGGTCCATTTGGTCGTACCGGTGAAAAGGGAGATAAAGGGCTGCCAGGTTACCCCGGTCCATCAACGCCAGGTCCTCAGGGTGAGAAGGGTTCCCCTGGATTTCCTGGCATTCCAGGACCCAAAGGGCTCCCAGGGGATCCGGGACGTCCTGGCCAAGACGGATTCCCCGGAGAAAGAGGTCCCAAAGGAGATATGGGAATAATGGGAGCACCGGGGTCACAAGGTTATCAAGGTGGTCCAGGAAGCCCCGGAGTGTCTGGACCAAGAGGTGACCCTGGTCTGACTGGGCCCAGGGGAGAGATTGGTGAGCAAGGTGTCAAAGGAGAACGAGGAGAGCAAGGAGAACGAGGACCACCTGGAAATATGACCGATGTGGACATGGAGCATATGAAAGGAGAGAAGGGAGATTCTGGAGACAGAGGTGATCCTGGTCCTACTGGACCTACCGGGGCCACTGGAATCGATGGAGATCCTGGACTGGCTGGAAAGGATGGAATGCCTGGATTACCAGGACAGCCAGGTGAGAAAGGTGACCCTGGAGTTCCTGGAGAACCTGGAGTACCTGGCCAGCCTGGAATTAAAGGAAGCATCGGAGAGATGGGAATTCCAGGGACTGGAGGTTTGAAGGGTACTAAAGGTACGATTGGAACACCTGGACATCGTGGGTTTAAGGGAGATGAAGGCATAAAAGGTGAAAAGGGAGAACACGGTCTTCCTGGAATAGGATTCCCTGGCGTCCCTGGCGAGAAGGGTCAAACGGGTACACCTGGTTTCCCTGGAGAGTCTGGACAGAAGGGAGTGAAAGGTACAATGGGAATCCCAGGAAGTCCAGGAACTCCAGGACAGAAAGGAGATGTAGGACAGACTGGCTATCCAGGTAGCCCTGGAGTACCAGGAGAGAAAGGTGTTACAGGGTTACCCGGGTCACCGGGAGACCCAGGTCTTTCAGGACGTCCAGGTGAGCCTGGTCTTCAGGGTCCTCCAGGACCAACAGGGCAGAAAGGAGAGTCAGGAGTAGATGGCATTCCCGGAGCATCAGGAGAGAGGGGTGATCCAGgtgTACCTGGTAGAGGCTTACCTGGAACGCCTGGAGAGTCCGGCCACAAAGGTGACAGAGGCCACCCAGGTCTTCCTGGTACCCCGGGAATCCCAGGTATTCCTGGAACCAAAGGAGAGAAGGGCTTACCTGGCTACGAGGGGATCCAGGGCCGACCTGGAGAAAGAGGATTACCAGGGCCGTCCATGGAGGGACCTAAGGGCAATACAGGACCTCAGGGAGAGCCTGGAGAACCAGGGCAGACTGGTGTTCCAGGCCCAGCAGGTGTTCCAGGAAGTCCTGGAGCCAaaggagagaggggagagaaagGTTTCACAGGTCCACAGGGTGCTGTGGGTCTAAAAGGTGACAAAGGTTTCATTGGACTTCAGGGTGAGCCTGGCCTACCTGGTTATAATGGACCAAAGGGTGAGATGGGAAATCAAGGTGTTTCTGGATTCCAAGGATCGAGGGGTCCACCTGGAGTGATCGGTTCCAGGGGTGAGGCTGGTGACAGAGGATTCCCTGGAGCTAAagGAAATGAAGGCCCTCCTGGACCTCCTGGGCCCCATACCTTTATAAAAGGAGATATTGGCTTCCCGGGACCACGGGGTCCTCCAGGTCTGCCTGGGGCTCAAGGGTTCCCTGGAGCAAAAGGACAACAAGGACTGATGGGTATACAGGGTATGAAAGGAGAAGATGGGGCACCTGGGTACAATGGACATCCTGGAGCAAAAGGAGAACCTGGGCTTATTGGACCTTCCGGACCCAGAGGATATCCAGGCCCCCCGGGTCCTGATGGACTTCCAGGTCCAGCTGGATCTCCAGGACCCTCTTCCATGGACCATGGTTTCCTAGTTACTCGCCACAGTCAGTCTATAGATGTTCCTTACTGTCCTCAAGGCACCACTCTGATCTACGATGGATACTCCCTCCTCTACGTGCAAGGCAACGAGCGATCGCACGGCCAAGACTTGGGTACGGCTGGTAGCTGCCTGCGGAAGTTCAGTCCCATGCCTTTCCTTTTCTGCAACATCAACAACGTGTGTAACTTTGCCTCTCGGAATGACTACTCCTATTGGCTCACCTCTCCTGAACCCATGCCTATGAGCATGGCCCCCGTTACTGGTGACAGCATCAAACCGTTCATCAGCAGATGTGCAGTGTGTGAAGCTCCAGCCATGGTGATTGCTGTGCACAGTCAGACCGTGGCTATTCCTCCCTGCCCTCTGGGTTGGACTTCTCTCTGGATTGGATATTCCTTTGTAATGCACACCAGTGCAGGTGCTGAGGGATCCGGTCAGGCTTTGGCTTCTCCTGGATCTTGTCTGGAGGAGTTCCGCTCAGCTCCCTTCATCGAGTGTCACGGCCGCGGCACCTGCAACTACTACGCCAACTCCTACAGCTTCTGGCTGGCCACCATCGAGGATGAGGAGATGTTTAGGAAACCTATCCCAACTACTCTAAAGGCTGGCAATCTACGAACCCACATCAGCAGGTGTCAAGTGTGTATGAAGAGGACTTAAGCCAAACCTGCTCCTTCTTCAGCATCTGGTTTTAATGTTCCAGtttttacagaagaaaaaaaaacagcatggtgCTACATTGGAGAGAGAAAGCTAGAGGAGATGATGGACTTAAAAGGTGTTCTTCAAGGACTGAAGAACGCTGATGGAACCACACAGACAGATGTCAGCTTTCTCTGGTCTGCGCTGACCAGACCCCCCCACCCCTGCTGGCGGCTCTGCTCCAATCAGAACACTACATACACTAAcatcctcactatgttcctttAGCAGATGACACCTGTTTACAATTGCACTGATTACATCTACTAGTGAACAGGCTGGCATTTTGAAAAAGAGTTTTGTGAATCAGGTGCTATTGAATATAACTATTCTATTTGTTCTATCGCTCGATCCttttgtgtgttattttttatacaattttaccCGTCCCATTTAACAGCACCAATTGTAAGTATCCAGTTTAtctcttttgtttattgttcagTTTCTCATTATCGATTACAGTTACTAACTCCAGCACACCGTAAGTACAGATTGTCAGCATCCACTTCACGCGGTCCAGCAGTCAGGGTGTAGTTTTGAGCTCCGCTGTAAATATCAAACGTTTGTTATAGTAACTAACAACTCGTCACGATCATTTCTTCAggtaaatgcattttaattttgtcataCTGAGTAATTTATGGAAATTTACGATTAAGATGAATCTATAACGTGACCAAGGGCGCTTTTTCCACACACTGCCGTC

Function

symbol description
col4a1 Predicted to be an extracellular matrix structural constituent. Predicted to be located in basement membrane; extracellular region; and membrane. Predicted to be part of collagen trimer. Is expressed in several structures, including cardiovascular system; eye; hypodermis; optic fissure; and paraxial mesoderm. Human ortholog(s) of this gene implicated in COL4A1-related familial vascular leukoencephalopathy; myocardial infarction; and retinal arterial tortuosity. Orthologous to human COL4A1 (collagen type IV alpha 1 chain).
col4a5 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within axonogenesis and basement membrane organization. Predicted to be located in extracellular region and membrane. Predicted to be part of collagen trimer. Predicted to be active in basement membrane and extracellular space. Is expressed in several structures, including digestive system; integument; nervous system; neural tube; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Alport syndrome and X-linked Alport syndrome. Orthologous to human COL4A5 (collagen type IV alpha 5 chain).

NR:

description
PREDICTED: collagen alpha-1(IV) chain

GO: NA

KEGG:

id description
K06237 COL4A; collagen type IV alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680521.1 True 5816 mRNA 0.54 52 29169686 29235749

Neighbor

gene id symbol gene type direction distance location
LOC103034135 irs2 coding downstream 89734 29061918 ~ 29079952 (-)
pdzk1 NA coding downstream 842261 28312499 ~ 28327425 (-)
st6gal2 st6gal2 coding downstream 920420 28181004 ~ 28249266 (-)
uxs1 uxs1,LOC107688726,LOC107676432,LOC107551074 coding downstream 1016039 28097459 ~ 28153647 (-)
LOC103028198 LOC103028198 coding downstream 1274799 27889747 ~ 27894887 (-)
rab20 NA coding upstream 106548 29342297 ~ 29351215 (-)
hspbap1 hspbap1 coding upstream 175141 29410890 ~ 29431502 (-)
sema5b sema5b,sema5ba,LOC108261041,LOC107661137,LOC107660660 coding upstream 292628 29528377 ~ 29738451 (-)
adcy5 adcy5,LOC107660638,LOC107555914,LOC107661140,LOC107596066 coding upstream 606800 29842549 ~ 29961255 (-)
hacd2 hacd2,LOC107660639,LOC107741899,LOC107661144 coding upstream 727368 29963117 ~ 29975924 (-)
G170881 NA non-coding downstream 150126 29019154 ~ 29019560 (-)
G170875 NA non-coding downstream 210676 28956460 ~ 28959010 (-)
G170858 NA non-coding downstream 375811 28793272 ~ 28793875 (-)
G170685 NA non-coding downstream 741999 28427477 ~ 28427687 (-)
G170661 NA non-coding downstream 978561 28188488 ~ 28191125 (-)
G170932 NA non-coding upstream 314311 29550060 ~ 29566450 (-)
G170938 NA non-coding upstream 532899 29768648 ~ 29776325 (-)
G170936 NA non-coding upstream 599286 29835035 ~ 29847918 (-)
G170952 NA non-coding upstream 698294 29934043 ~ 30070482 (-)
G170967 nifk non-coding upstream 815841 30051590 ~ 30055507 (-)
G170854 NA other downstream 482007 28686050 ~ 28687679 (-)
LOC111194963 NA other downstream 1266787 27900191 ~ 27902899 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 2917420 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 3264070 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 3660270 25501940 ~ 25509416 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 2660083 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 3522758 32758507 ~ 32776018 (-)
G171553 NA other upstream 3938304 33174053 ~ 33176284 (-)
LOC103028031 LOC108426040 other upstream 3978573 33214322 ~ 33235878 (-)
LOC103024438 LOC108426008 other upstream 4072244 33307993 ~ 33318351 (-)

Expression


Co-expression Network