LOC103028198 (LOC103028198)


Basic Information

Item Value
gene id LOC103028198
gene name LOC103028198
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 27889747 ~ 27894887 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260403.3
TTTGATATATGCATATGTGCTGGAGAGTTAAAATTATTTGGCATTTCCTCTAGGTATTAACATCTTAAAATGGAACTACTACCATCTTTCCCTCAAGCAACTGCATTAAAATATATccgattcattttttttatactctcaatacaatgtaaaagaataatataatagtattaagaaatataaaaaataaactaaaacattaTAGTTAATTATGGTTTCCTGAATATATCAGCAAATGGCCATTTTAGTAATTGCTCACTAAGCTGTATGTTTTAATGAggggacaaaaaaaatctgactttttggaggtttgttttaataaacCTTCCTCTCTCTGGTCAATGTGGTCTTCAGATTAGACTTTGAAACACTACTTGAGGGGAAACATTAGCCAACAGCAGGTGAGCAGACTCGGGTGTCACATTCAGCTTCTGGACAAAAGCATATGGTAAGAAGCTGCTCTCTATATTTGAGGCTTGAGATAAACCATAGCTGATGAACATTAACAAAGGTCCCAAAAACTTACAAACCTCTGAAATAATTGTAATTCTGCCAACACTCAAATCATTTCTATTGGCCATCAGCTGCTCTCAGATCCAACAAATTCTATTTAATTGTGTGTAGCTTAATACGGTTTGTGTCGATCCATTATTAAAGCCTGGGTTTGGGTTACAGACCTGGTTGCTATGTCTACAGAATACGTCAAGCGAAACACACAGAGCACATGTGCATCACTTCAGCACAATGGACAGTGAGTTTGATCCAAATTTGAGCCCAAATCCACATGTTACAGGTATGTAAATTCTTCGCAAGTTGTGGTGTCCATCAAGGTTACTCAACGAGGGTATGGATGTAGATCAGCAGATTTGTTTGAATAGGTATCATACTGATTGTACACCAAGGACCTGGTTGCTTTGTTTGCCGTGATGTTCAAGAAGATCAATGCCGCTTTCCGCCCCAACCATGGGCACCGGTTACGGGAGGACTACCACAACGCCTGCACTGTAAAGTTGGTGCGCAGCACATCCATGCTCGTGGTTGGGGAGAAGAGTGGTGTACGACAGGACTCGACCCTGAAGAGGAGTGTTAGTGCGGTCAGTGTGGAGTCCAGCACAGCTCTGTATTACTACCACAGCCGTGAGGACAGGGTATGGCTTTACTCTCAGAACCAGAACTGTCTGGAGTATCTACAGGAACTGGTGGCACTCCGACGACAGTACACGAAGAGCATCAGTGACCTCAAACATGCAGAACGTCAAGAGACTGTCTCTGCCAAGAAGAAGCCTGCACCACCTCCACCACGGCAACCACAGCACAGAAATGTCCAGCGTTCAAGTCCAGAACCTTCAGCACCACCAATACCCAGTGAAGAGGACACACTGCAATTCTTCGATGAAGTTATTGCAAGCTGTGACTCTGAGCGCAGCAGAAAACCCCATGTGGATGATGGTCATGCAGATGTGGACTTTGTAGTGGCCACCAGTACGTGTGAACACGATCTCCACTCTAACTGGGTTTTGAGGGACCCTCGGAGGATCTCCATGGACGAATCTCGCCTAAAGCAAGCAGACCTGAGCTCAGAGCAAGGGTCTTGGAAGAAAGTGTTTGGTGGGACCACTGGCACTAGGCGTCTGCAGAGAAACCCCATCCATCTGCCCAAAGTGGTAGAGAGTGCCTTCCAGACCTTGCGCTTCAAACCCAAGCTTAAGAAGAAAGATTAGCAACTGGGActaaaagaaaatgcttttcTAGAGCGTGGCCAGTTCCAGTTAGAATTTTATCAACATGAATTCTACAGAACGTGCCTTTATTTCAGCATAGAATAGTACAGAAGATGAAACAGGACGATTCTACAGAAGATTTCAGGGATTTCAAAGGGTCTTATCATATGCCACTATCAGTTGGTGGCAGATGAGATTGGAAATGGTGGGAAAATTACACTACTTAACAGATTGAAGCAACCGTCACTGATATTGCTCAGTCAACGGCCAAGTTGTGCATTGTGGAAAAAACATGGAAGTGAGCTCTGTGATGTAATACTGGGGTCCTGGAACTCCCTCACTGGCCCAGGTTCATCAATTATCCACGAtcagtctcagtttcagcagctCTCAACAGCACTGCGCTCAGTGCCTCCACCAGGGCATGACCAAGCTGTGCAACTTTGGTTCATAGAGTTTTCCAGTCCGAGTAACAGGACTCTCTCTTACTAATAACAAACCTTGTGTAGAGATTTGTCTACTGATCTGTCAACGATCTGATTAATCAGTCAGCCGATCAAGATGTTGAGACAAGGGTTGAGAAGCACAACAGTGTCCTCAGGCCATTTCCAGGATCCCTTGTTGCTGCTGAAAATGGATCAGATGACTGAAACCTGGTAATGTTCAGTCTAATCAAACCTCAGCACCTGGTCGGGGCGCAGTCTACTGGGTTCCCTACTGACCGAGATACATTGGGATTGGTGTCCTTGTGTAAACCCATTTTTCTTGTTCCATACCATGGAAAACAgtttggaaaattaaagtacATACTTGATCATCAAAATAATCATCTGGGCTAAATTACAGCATGCCATTAGTGAGTTCAGTACAGTACGGATGTTTCCAGTTACCAAAGTGCCTTCATTTGTTAGGTTTGAGGAATaattttgaaacaaaaaaaacaagcttgaTCTTTGAAAACATAATAGGtgagtttcccagacagggagaGGAAAGGTTCAGGACTATGCTGGATTATCTCTTTCCAGGAGAGCAACCTACAAATTCATAATCGCCAAGTCTGATAGGCTTTGTTTTATCTAAACATATGATGTGTACAAGTTGATGTTGTGGTGAGATGATCTCACCTTTGTTTTTCAATAAAAGCTCACTAACAGGAACACGTCACACGTTCCCTGCTAGTTTCTTTTTCACAGAAAAGAGGAAACAGGGTTTATATTTTCTGACGAGACAGTTTAGGAAAACCCCAGAATACCACCCTGCAGGTGCCAGATGTTTTAACCTACTACCACAATTCAAAAGTATGCCATATTTTTGCTATGCTGTTGTGTGGTGTCAATAATATGGTATTGTCTGTATGCATTCAGAAGCAGAAAAGTAAAGgacttattatatattattatggtTTTATTAGATTACTTTCATCTACTTTGGCTTgaaagcagagggaagcattaagTGCTATGAAATTGGACTTGATATAtcaacacagtggaccaacaccagctgATGACATAGCTCTTCACTGTGGTAAATGTAATTGTCCAGTAGGACCAGGCACCtccccacactgccaaaaaaaacaactggtcttacataatattctaatttactaTGTCAACTTTTGGGTTTTTAGAAGTTATTAGCCttaatcatcaacattaaaataaataaatgcttgaaatggatcactctgtgtgcaatAAATCCATACAATTTAAGAGtttaatttttcaaattaaattactgaaataaaacaacttttcaATTAgattcaatctttttttttttttgatgcatcTGTACATTACCATGTGCTCTACTGGGTTAAAGTCGCTTTATActcaatattctttttttttctattttccccATAATTTAAT

Function

NR:

description
uncharacterized protein LOC103028198

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260403.3 True 3604 mRNA 0.41 3 27889747 27894887

Neighbor

gene id symbol gene type direction distance location
LOC103030840 spryd7,LOC108430519,LOC107600395,LOC108266652 coding downstream 46194 27836324 ~ 27843553 (-)
LOC103030092 kpna3,LOC108430517,LOC103046682,LOC107676880 coding downstream 54274 27824339 ~ 27835473 (-)
gtpbp8 gtpbp8 coding downstream 66384 27815809 ~ 27823363 (-)
slc10a2 slc10a2 coding downstream 73987 27810358 ~ 27815760 (-)
LOC107197926 NA coding downstream 80939 27805888 ~ 27808808 (-)
uxs1 uxs1,LOC107688726,LOC107676432,LOC107551074 coding upstream 202572 28097459 ~ 28153647 (-)
st6gal2 st6gal2 coding upstream 286117 28181004 ~ 28249266 (-)
pdzk1 NA coding upstream 417612 28312499 ~ 28327425 (-)
LOC103034135 irs2 coding upstream 1167031 29061918 ~ 29079952 (-)
col4a1 col4a1,col4a5 coding upstream 1274799 29169686 ~ 29235749 (-)
G170611 rnaseh2b,LOC107600410 non-coding downstream 70 27882680 ~ 27889677 (-)
G170603 NA non-coding downstream 27195 27862156 ~ 27862552 (-)
G170582 trim13 non-coding downstream 38556 27845972 ~ 27851191 (-)
LOC111194936 NA non-coding downstream 268960 27617687 ~ 27620787 (-)
G170549 gtf2e1,LOC107733656,LOC107738514 non-coding downstream 392108 27496098 ~ 27497639 (-)
G170657 tmtops2b,LOC108431481,LOC107716802,LOC107602912,LOC108266815,LOC107096900,LOC107688724,LOC107551048 non-coding upstream 280448 28175335 ~ 28175654 (-)
G170658 tmtops2b,LOC108431481,LOC107559924,LOC107748531,LOC107738308 non-coding upstream 284087 28178974 ~ 28179208 (-)
G170661 NA non-coding upstream 293601 28188488 ~ 28191125 (-)
G170685 NA non-coding upstream 532590 28427477 ~ 28427687 (-)
G170858 NA non-coding upstream 898385 28793272 ~ 28793875 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 1637481 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 1984131 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 2380331 25501940 ~ 25509416 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other downstream 3536839 24307650 ~ 24352908 (-)
G169567 NA other downstream 4994315 22894768 ~ 22895432 (-)
LOC111194963 NA other upstream 5304 27900191 ~ 27902899 (-)
G170854 NA other upstream 791163 28686050 ~ 28687679 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 4000945 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 4863620 32758507 ~ 32776018 (-)
G171553 NA other upstream 5279166 33174053 ~ 33176284 (-)

Expression


Co-expression Network