G170549 (gtf2e1,LOC107733656,LOC107738514)


Basic Information

Item Value
gene id G170549
gene name gtf2e1,LOC107733656,LOC107738514
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 27496098 ~ 27497639 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU230868
CCCAGCTCTAACAGTGTATCTGGGGTCTCACCTGTCATCGGGTCGAACAGCTGGTTGGCCTCCAGGTCTGTGAAGGTGTTGTGGCAGCACGGACAGCGGAAGGATGCCCTGTTGGTGGAGTCGCGCTCGTCTGTCTCGATGCGCCGTCGTATGTGGTCCAGTTTGTATTTGACTACATTGACCAGCAGACGGTAGTTGATGAAGTAGTAATTGTGGCGCGTGGTCTTGCCGTCAGGCGCCGTCTCCACTCGCATGCGACATTTGACAAACTTGTCTCCTTTCAGCGTGTTGAGCACCGAGCGCAACTGCTTGCGGTCGAACTTCAGCAGCTCCAGCATGTCTTCCTCTCGCACGCAGGGGTTCCGGATCAGCACGTCCAGCGCTAGGGCGTGCTCGATTCCATAGAAGCCACGCACCACCTGCTTGGCCAGGCGCTTCAGCGATGCTGGAACCTCCGTCAGCAGCTCCGGTTCCGTCATGATGGAGAGAGCAGGAGGAGGCTGCAGGGAGGGAGAGACACAGTGATGGACTGATAGAGTAACGGAGGTGACTCAAGGAATGGGGCGTCTGTCTTTAAAGCCACAGGTGGGATCCAAGGTGACTGGTTCTGCAGTATGAAGTTCtCTGTTTGGCTCAGGAGCAGATTGTTgactgttagcggttagctaaGCCAACAACTTTCCACAGTAAAGAACTAAACTTATCATTAACCGATCGAGTTTACCTCGTACCCACACTAAAGACTGTCTGTTTACTAACGTTTATAATCTACCAATAGTGTTTAAAGTCCTAAAAG

Function

symbol description
gtf2e1 Predicted to be involved in transcription open complex formation at RNA polymerase II promoter. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be part of transcription factor TFIIE complex. Orthologous to human GTF2E1 (general transcription factor IIE subunit 1).

NR:

description
general transcription factor IIE subunit 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230868 True 796 lncRNA 0.53 2 27496098 27497639

Neighbor

gene id symbol gene type direction distance location
lcmt2 lcmt2 coding downstream 581 27484506 ~ 27495517 (-)
LOC111194935 NA coding downstream 24728 27470248 ~ 27471370 (-)
LOC103034209 rab5b,LOC108430508,LOC107551955,LOC107738511,LOC107598172,LOC107698530,LOC108266395 coding downstream 32145 27448518 ~ 27463953 (-)
armc8 armc8 coding downstream 59943 27406353 ~ 27436155 (-)
idh1 idh1,LOC107663883 coding downstream 329836 27148571 ~ 27166262 (-)
LOC107197926 NA coding upstream 308249 27805888 ~ 27808808 (-)
slc10a2 slc10a2 coding upstream 312719 27810358 ~ 27815760 (-)
gtpbp8 gtpbp8 coding upstream 318170 27815809 ~ 27823363 (-)
LOC103030092 kpna3,LOC108430517,LOC103046682,LOC107676880 coding upstream 326700 27824339 ~ 27835473 (-)
LOC103030840 spryd7,LOC108430519,LOC107600395,LOC108266652 coding upstream 338685 27836324 ~ 27843553 (-)
G170548 NA non-coding downstream 15676 27479901 ~ 27480422 (-)
G170545 NA non-coding downstream 19963 27473202 ~ 27476135 (-)
LOC111194934 NA non-coding downstream 114584 27378534 ~ 27381514 (-)
G170506 NA non-coding downstream 351389 27061004 ~ 27144709 (-)
G170508 NA non-coding downstream 402231 27078539 ~ 27093867 (-)
LOC111194936 NA non-coding upstream 120048 27617687 ~ 27620787 (-)
G170582 trim13 non-coding upstream 348333 27845972 ~ 27851191 (-)
G170603 NA non-coding upstream 364517 27862156 ~ 27862552 (-)
G170611 rnaseh2b,LOC107600410 non-coding upstream 385041 27882680 ~ 27889677 (-)
G170657 tmtops2b,LOC108431481,LOC107716802,LOC107602912,LOC108266815,LOC107096900,LOC107688724,LOC107551048 non-coding upstream 677696 28175335 ~ 28175654 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 1243832 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 1590482 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 1986682 25501940 ~ 25509416 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other downstream 3143190 24307650 ~ 24352908 (-)
G169567 NA other downstream 4600666 22894768 ~ 22895432 (-)
LOC111194963 NA other upstream 402552 27900191 ~ 27902899 (-)
G170854 NA other upstream 1188411 28686050 ~ 28687679 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 4398193 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 5260868 32758507 ~ 32776018 (-)
G171553 NA other upstream 5676414 33174053 ~ 33176284 (-)

Expression


Co-expression Network