RNA id: XM_022680512.1


Basic Information

Item Value
RNA id XM_022680512.1
length 6915
RNA type mRNA
GC content 0.44
exon number 8
gene id st6gal2
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 28181004 ~ 28249266 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagaaagagaaagaaagcaagcaagcaagcaagcaagAGGGAGGGGAGAGACAGGAGGAACGAGCTGCCTTTACAAGCATCTATCTCAGGCTGTTGCTTATAGCATGCACGCGCGAGCGAgcgagcgtgtgtgtgtttgtgtgcgcgtGCGGTGAAAACGCTAACAGCAGATTGAGATGAGGAGTCTCGCGCGTCTCAGAGAACAATGACCGCGGGCTGATATCTCAGAGCCTAACTGTGAAAGAGGGATGGAGCTGCACAAATAGGAAACCAGCTGAGGCCTCTGGCTGAAGTCTCCTGTAGAATACGGGGCGGCACAGGAGGGCAGAGGCCGCCGGGATGACGAGCCTGAAGCAGTGGCGGCGGCTGGCCCTCGGCCTCATGCTGACCTGGGTGCTGCTCTTCCTGGCTCTCTTCTCGTACTTCATGGAGTCTCGGGTGGATGAGTCGCGCTCGGCGGGTGCCCTCTCGCACGCCGAATCTCACCACCTCAGCGCCGTGCGGGGGAACCCTCGCGCCATCATGGCCTCTCGCCTGGAGTCCCCCACCGGCTCCGGTCCTGCCGCCTCCAGCATCCAGCCAGAGCAGAGCCTGGAGCAGAACCCCAGCACCGAGCCCCAGGCCGGCCGGCTGAGCCAGGAAGCCTACCCTTACCCCGACCCGCAGAGCCTGGCTGCGTGGTCGGCGTTCGGCACCCAGGATGTGGGCGTAGTGACCCGCAGCCGTGAGCAGGAGCAagaagaggatgaagaggaggaggtgaTGGTGGGAGGCCTGGTTGAAGCAGAAGAAGAGGAGGGTAATGAGGAGGAGAGAAATGTGGTGAATAAACGAGCGATAGCCCATCAATGGGACGATTCTGAGGAGAGCTACTTCTCCAAGTCCAAGTCTGTAGTGCACCGTCTGTGGAAGGGGAGCGTATCTGTGGGCATGCTCAGTCCACGCCTGCAGCGCGCTGTAAAAGATTACCTGAGCGCTAACAAACACGGAGTGGCCTACAAGGGCAGGCGGAGTGCTCGGCAGAAAGGAAAGCAGCTGCTGTGTGAGATGAAACGGAAAAGCCGGGTCAGGACGCTGGACGGAGCAGAGCTGCCCTTCTCCAAACTGGGCTGGAAGAGAATCGTACCTGCCTCTCCCCTCCAGCAGCTCTACGGCTCCAGGTTTGGCTCCTGTGCTGTGGTCACCTCGGCCGGCGCCATCCTCCACTCCGGCCTGGGAAAGGAGATCGATTCCCATGATGCCGTTCTGAGGTTTAATTCAGCGCCAACTGAAGGCTATGAGAGAGACGTGGGGAATAAGACCACTATCCGCATCATAAACTCTCAGATCCTGGCTAACCCCGGCTACCACTTTAACACCAGCTCACTGTATAAGAATGTTACCTTGGTGGCGTGGGATCCTGCGCCGTATGCTGTGAACCTGCACAAGTGGTATTCAAGCCCAGACTACAACCTGTTCACTCCGTACATCGAGCACAGGAAGCACTTTCCTGCTCAGCCTTTCTACATCCTCCACCCCAAGTTCATCTGGCAGCTATGGGACGTGATCCAGGGCAACACCTTGGAGAACATCCAGCCCAACCCACCTTCGTCAGGCTTCATTGGCATCatgctgatgatgtcactgtgtgAGGAGGTCCACGTGTACGAGTACATCCCCTCCCTCCGACAGACCGACCTGTGCCATTACCACGAGCGCTACTATGACGCGGCGTGCACGCTGGGCGCTTACCACCCCCTGCTTTACGAGAAGATGCTCATCCAGCGCATCAACGTGGGCTCTGAGAGTGACCTCAAGAGGAAAGGCAAGGTCACCCTCCCCGGCTTCAGCACCATCCACTGTGACTCCTGAACTCTGATCCGTGTGGAGAAGGGAGCAATAAGCATCCTCGATTTAGCAGAGGAAGCCCACGGACCGTCCCGGGACACACGGCTGAGTCTGGGTTTGGCCCCCCCCACGACCCACGGACCCTCACCGGGACACCTGAGCTCGACAGCCGACAGGGACGAATCCGTGCTCTGAGGAACCGTTTCTAAACGTTGCGTTTTCTGAGCCATGCGTGATTTAGAGATCATCGGATAGCAATAGGGTTCTCCTAGAGAAGATGTTTTTAGATACTTGGCCATTTTGCTGTTGCTAGCCATCGCGTGACCATGTTGACAGTGTTTGTGATTGTGTTGCTGGTCTAGTCGTGAGGGGAAACTTATGTGTTTAACCGAAATCCTGCGATGGAGATTTTTGGGAGGGGATTTAAAGAAGTGTTTTAGAAGTCAAACACACTGAATGTTACCAGTCCATTATAGGTCActtatacagacacacacatatactatgtataaaaaaaagaaactaataatGACAAATGATCTATCTTCACACAAACGGATGaaggttttaatttatttttacttactttAGTGACTGCACCTTTTAAACCCACTGTTTTActagtgggtgtgtgtgtctcGAATAACTTAATAGCAGGTCTCTTTTTTGTGGTTCTCAGTGGAGATCTGACTTTTGTTTACTGCTGTATTACAGTTTCCTCAGCTGCTCAATTCTTTGAACGTTTTGGAAAATATTGTGCTCTTCCTAAACTGCCGTCTGAgctgtttgtatttttaactcgAGTCCTACGTAACCTCTTGgacactgattaaaaaaaaactaaacatactTTTAGACGACgtacaaaaaatatgaattgtttagttatgattgtttttttatagcatGATATTAAACTTCAGTCAAGTTACATCATCAGAGCagttgaggaaaaaaaaatgtctttttcaCCTGCACTTTAGGAGAGCTTTGAGAGCTTTTACTGCTCCAGGGTTGGAACTGTTAGTGTAAAGGCTGGAGGATACGGGCCTGGTGGACCCAGACACTGCTTGACCGTCGTTTGACTTCAGGCCTTTGGCAATATATAATCAGTGCagtgatgattatgatgatgatgactgaTTGCGTTGTGTTTAAACCAGTGACGCCTGGTTGTCCTGCGTGTTTTGCGGTTCCAGGATCAATAACAGGTCCTCATCATGCGCTCCCTATGGAGTCGCAATCAAAAGCGAATGAAAAGTTAATAGAAATTTCTTAGTTTTCCATACATTGTATGCATTGTGTGCATTTTGAAGCGTTTCATTTGGACATTTTTACTTacaatttttaaattcacattgtgtttgatatgtaaatagttttttcttggttttttttttttttttttttgctgtttgtttttttaactgatgTAATTCAAAGTTTCGTCTTTGTCTACGCAGTTTCAGTATGTGCCCTTTTATTTCAGAGGGTAAAGACTTACAAGCGCATCTGAATTTGTGATCTAGAGGAGGGGACTAAAATGTGTACAGGTCAAATCTGTTGTGAACTGTAAGGCTAGAGATGTACTTGCTGTTTGGCCATTCGTTCATTCAAACAACCAGCTGCTCGTCTGCGAGCTACTTGTGTTACCGGAGGCTTCCACTAGAGGCCTCCACTTCTCACAGTCATAAGAACACAacatacaggtgtgggtgtttctAAGGAGAAACCAACGCTTCAAATAAAAGCAAGAAACGTAAAGCAgccatttttatgtttattacatatttaacaGCAAGTATTTCTCTGGCCTGATAGCAAAACTATTAACAGATGTTTTCACTCAGGTGTTCGTTAGACTTCTGAAACGAGTTTAATAGCCAATACATTCTTCACAGTCTTCTCTAGACATCACTTTATGAACCTCTGTGTATACTAATCAGTATGATGCTCTAGTGGTAAACTGATGGTGGTCCAAGACGGAATATTTTACTTCCTTTCTGTCTTTACTTGAGAAGTGAGGGAACGATGTTATGCAGTAAAAAACAGAGTGAAGGCTTCTGGATTTGATGAGACTTCTAGTGCTGTAGATGTGGGTAAAGCTTTTGAAGGAGTCCAGAAAAGGTTCTTAAAACAGTCCAAGCAAATAACACAAGAAGGCCTGTCAAGATAACTACTTTTTTTGGACAATATGTCGtcacaaaaatacaattttaaactattttagaGAGCATTTATTAAGAGTTCAACTATTGGGAATATTCAGAAATTGGAATAAATTGGAATAAAACTAAACTGCACGAAATTAAAATTTGGCCCGAAACCAACCAAAACAATTatctaaatactgtatttttacacttgCTGTTACACTCAATAAATTAAAGGGCCTACATGCGAGTCTGTCTTgcttgttaaagaaaaaagcaatttcagaacaacaattaaaaacatttattgaacaTCCTAGAAATGCAAAACACTGCAGAGGTCTTTTAATTTGAAACGAGGAACACAGAAACCAGAatccacatatttttttttttagcagtcgTTAAAACCAGTATGTAATGCTGAAGCGAAGCCTCTTTCGAACTAAAGCTATAGACAAAGCAGACAGAACTTGCCAGCTGTACACCAGCCTTAGCTAAAGCTAACAGACCCAGGCTCTGCTGGAGCGTGATGCGTGCTAGCAGTTTTTTCTGGATTACTCTCACCAAAGTTCCTGGTCTGCTTTAGGTCTGCTTTAGCTAACTCTGACATCATTGGGCTGTTTAAAATAGTCCTAATGTTGAGAGTAAACACTGTAACGCTAAAATAATTAGCCATTTTTTTGGCTgctaaatatttagtgcatctcTACCTAAAAATAATGCTTTTAAAACAGTTGACGTACCAATTGACGTACTCATTCATGTTAAAGAGCTTACCTGAATGTCAAAAAGGTCAAAAATTATCAATTTCCTTGTATCATACGGGAATTTGATCATGTAATTATCTTGACGGGCCTAAACACAGACAAGGCTACTGTTGCTCTGTGATTGTTACAGACTTGAATTGAAACAGGAAAGCTGAACATCGTATTTAGTTCTTTATCATGTATTAATTGTGCCATCACTCCCATTCTTTCTACAGAAaattcagtttctgttgttgGAAAGTGAGTCAACATGCAGTGTTTCCATGCAGACCTACACGCCACTGAGCTCCTCAGAGTTTCTGACCAACTCTTACTGAATGTCTCCTAAGCCTTTAAGAGGACCAGTGTCTGCTAAGGGAGGAACTGCACTGTGCTGGGTTTGTTTCAGAGCAGCAGAATGATTTGTAGGAGTTTTTAGGGAACTTCTTATGTAAAACCGGCCAGTCTGGATCGTGCTTCCCAAATGCTTTGTGGTCTGTTttacgatattggaaaaaaaaaaaaaagtattcgaCATCTGCTGATGTTCAATTTAAGCCCTATtggttttttttcccctttttgtCACAAAATGTTGTGCCATTGTGATTGTACAAGTACTTTCCAAATGAAAACTGAACTGTGTAATTAGTACAATGCAAAGTGGATGCAGCATGCTAAGTAGCAGGGTTTCTGAGCCCTTTGTGGTGAACATGCTTTGTCGTCTGTAAATATAGGTCAGCAGTTCCTAATGTAAAGTCCTGGGGACCCCgtttttggcatgtttttgcatgttttccTTCCTGCTCCAATTCTGTGTTCACACAGCTGGTAAAAGTGGTctaaagtttgtttgtttgttttttccctAAACAAATCTGATGTATATTTTCAACTGTTCACTCAAATCCTTTTACTGTGACCTAGTGTGTGCATATGACGTCTGTCTGAATGGTTCCTGCTGTGTAACGGACACACATGCTAAAGAATGACGCTTAACGTTACGTTTCGCTTTAATTCCTGCCAGAATCATAGAGTTCAGGCTGACTTGCCTCATCACGCAGAGAGCATTTGAGCTCACTGCAGAAACTGTATGTTTTTCAGACATGGGcgtgttttaaatgattttctttTGATGCTGCAGCCACAACCTGTAGACCTGTAAATTCATTGAAAtgattcaaattaaatataaatcagaTTGCAATATCAAAATAAAGAAGTGGACTTTTCCGAATAACATTCAActttttacagtgagcttaaACACTTTCTCGCTGATAAGCGAGCTTTCAGCTACTGGAACCCCTTCATATCTCCTGTGATGCTGCTGAaggtgaaaccgaaacttcacgtgaaacATTGCTCTTTTACGCATGTGATATGGGttacagtaaaaacaaacatagggtttgctaaaaaaaaatgtttgctgcGTGAGCATAGCATAGGGTTCTCTTCAGTAATGTCAAATATTTCTAGTTCCACATACAATTTTTTTGTTATGATAGGGTGCTATATTAAAAATGGGGAAGAACATTTCGATCAATTTTTGTTTAAGTTAAAAATCAAAAGTGCTGcttcttttaaacatttattttgtaagaGTTTATAGTAGGGGCTGTAAAGCATAAAAACATGTTTCCATATCCGGGATCCCCATGACTGGTTTGAGAACATCTAGATAAAGAGCTAAGCGGGAAAAGGCGATGTAAACTTTTCTGAGTTAAGCTTctctttaaatgtgttaaagttGTCGTTTTTGATAACAGGAATGAAGTAATGAGTATTAGACAATATGGTGAGTTTATCGATGCAGTATGTTCGGAGGTTCTGAGCCAAACCATGTTGATATTAAAGGTCTACGAGTGTCTGGTGCTGTGCATCTGTGCTGGGTTtctatttctctatctctctctatctatcgctattactcactctctctctctttttctctgccaCACAGCCTTTAACTTTGACCTGGTAATCctgtatatttcagtgtaaatgGCAGCAATTTTACTTTCCACCCAGTTCACTTTCAAAAGCCATAGGATGCTTTTGATggcatttctttcttttgttaatGCAAATTTCATGACTGCagaattaaatctgtttttaaatgatcttgtgtattatgttatttgttttctaacatgtaaataaaaatacacaaatta

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003835 beta-galactoside alpha-2,6-sialyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230999 lncRNA downstream 1796 28178974 ~ 28179208 (-) True G170658
TU230998 lncRNA downstream 5350 28175335 ~ 28175654 (-) True G170657
TU230942 lncRNA downstream 291327 27882680 ~ 27889677 (-) True G170611
TU230943 lncRNA downstream 291327 27888934 ~ 27889677 (-) False G170611
TU230934 lncRNA downstream 318452 27862156 ~ 27862552 (-) True G170603
TU231034 lncRNA upstream 178212 28427477 ~ 28427687 (-) True G170685
TU231273 lncRNA upstream 544007 28793272 ~ 28793875 (-) True G170858
TU231298 lncRNA upstream 707195 28956460 ~ 28959010 (-) True G170875
TU231304 lncRNA upstream 769889 29019154 ~ 29019560 (-) True G170881
TU231376 lncRNA upstream 1300795 29550060 ~ 29566450 (-) True G170932
XM_022680510.1 mRNA downstream 27357 28097459 ~ 28153647 (-) False uxs1
XM_007227947.3 mRNA downstream 34451 28097459 ~ 28146553 (-) True uxs1
XM_022680673.1 mRNA downstream 278154 27900191 ~ 27902850 (-) True LOC111194963
XM_007260403.3 mRNA downstream 286117 27889747 ~ 27894887 (-) True LOC103028198
XM_007260412.3 mRNA downstream 337451 27836324 ~ 27843553 (-) True LOC103030840
XM_007227944.3 mRNA upstream 63234 28312499 ~ 28327425 (-) True pdzk1
XM_007227927.3 mRNA upstream 812653 29061918 ~ 29079952 (-) True LOC103034135
XM_022680521.1 mRNA upstream 920421 29169686 ~ 29235749 (-) True col4a1
XM_007227930.3 mRNA upstream 1093032 29342297 ~ 29351215 (-) True rab20
XM_007227923.3 mRNA upstream 1161625 29410890 ~ 29431502 (-) False hspbap1
TU230949 other downstream 278105 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 2275522 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 2671588 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 3856499 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 5285572 22894768 ~ 22895432 (-) True G169567
TU231269 other upstream 436785 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 3651083 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 4509253 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 4924788 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 4965057 33214322 ~ 33235878 (-) True LOC103028031

Expression Profile