RNA id: TU231304


Basic Information

Item Value
RNA id TU231304
length 329
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id G170881
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 29019154 ~ 29019560 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attggcattggctcattttttgtgaaaaacatatatcaaaacacattttcgataaacacacactgtaccccccccccccctacacatttatattacatacagtatgtttgaccaagggctaataaacattgcttcatttgtaaatttgaaactaaacaaattttctactcatatcttgagtttaattcattttcttttacattttattaaaaaactaataaaaaaagagtagcactttttgaaagaaatgtaacataagaaaggtaaagggtaaatattaaccatgtaagctgtttatattgcttgcaatttagacacacaagggttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231298 lncRNA downstream 60144 28956460 ~ 28959010 (-) True G170875
TU231273 lncRNA downstream 225279 28793272 ~ 28793875 (-) True G170858
TU231034 lncRNA downstream 591467 28427477 ~ 28427687 (-) True G170685
TU231008 lncRNA downstream 828029 28188488 ~ 28191125 (-) True G170661
TU230999 lncRNA downstream 839946 28178974 ~ 28179208 (-) True G170658
TU231376 lncRNA upstream 530500 29550060 ~ 29566450 (-) True G170932
TU231387 lncRNA upstream 749088 29768648 ~ 29776325 (-) True G170938
TU231380 lncRNA upstream 815475 29835035 ~ 29836921 (-) True G170936
TU231381 lncRNA upstream 815475 29835035 ~ 29847918 (-) False G170936
TU231409 lncRNA upstream 914483 29934043 ~ 29991508 (-) True G170952
XM_007227944.3 mRNA downstream 691729 28312499 ~ 28327425 (-) True pdzk1
XM_022680514.1 mRNA downstream 769888 28181004 ~ 28249266 (-) False st6gal2
XM_007227927.3 mRNA upstream 42358 29061918 ~ 29079952 (-) True LOC103034135
XM_022680521.1 mRNA upstream 150126 29169686 ~ 29235749 (-) True col4a1
XM_007227930.3 mRNA upstream 322737 29342297 ~ 29351215 (-) True rab20
XM_007227923.3 mRNA upstream 391330 29410890 ~ 29431502 (-) False hspbap1
XM_007227924.3 mRNA upstream 391330 29410890 ~ 29431424 (-) False hspbap1
TU231269 other downstream 331475 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 1116255 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 3113672 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 3509738 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 4694649 24312583 ~ 24324505 (-) True G169980
TU231746 other upstream 2880788 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 3738958 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 4154493 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 4194762 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 5917745 34937305 ~ 34959712 (-) False rftn2

Expression Profile