RNA id: XM_007227924.3


Basic Information

Item Value
RNA id XM_007227924.3
length 1604
RNA type mRNA
GC content 0.48
exon number 8
gene id hspbap1
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 29410890 ~ 29431502 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCGAGCGCTCACGTGAGTTTGTTTACAACGGAGGAGTGCTGAGCTAGTTTAGTCCTGCTCTGTTTCAGGGGATGTGATCGAGTTTAAACACGTGGTGTGGCGACTGTAATTGATCACTGAAGATATGGCCACCAAATCCTTCAGCCCAAATGAGGTGCAGAGGATCATCCATACTCTGCACAGACCAGCCGTGTTCCTCAACATGACTGATGACTGGCCGGGACGAGATTGGACTCTGGAGCATTTGGCAATTTGTCTAGGAGAGAAGTCTGTGTATTTTCGTATTGGAAAACGAGATGAGGGACACGGTCCTCTTTTTGAAACGCAGTGCTCTTACGTCGAAGCAACGCTTGCAGAGTTTTTGTGTTGGACTAAAGGAAAAAGTGACTCATCTGTTGGCCCATTTTCTTCCTACCCCCTTTCAGAGTACTGGGCTTATGCTGATTATAAGTACATTGTCCTGCTTTTTCAGGAAAAAGCCACAATGTTTAAGGATGTGGTGTGGTCAGACTTCGGCTACTCTGGTCGTGATGGACGAGAGAGCACTCTTTGGATCGGGACTAATGGTGCTAATACTCCTTGTCACCTTGACACCTATGGCTATAACCTTGTCTTTCAAATCCAAGAAAACGATGGCATCTCTTCCCCCCTGACGATGCTGACTGTCTGTACCCAACACGCATTCCATACGAGGAGTCCAGTGTGTTCAGCCGGGTCAGCATCATTAAACCTGATCTGTGCCAGTTTCCTGCTTTCAGGAGAGCCAGAGCCCATGTTGCGACTCTGCAACCAGGTGCTGTTCGTCCCGAGACACTGGTGGCACTATGTGGAGTCCGTGGATCCAGTAACGGTCAGCGTGAACTCGTGGATGGACATGgAGATCGATGATGAAGCCAGAGTAGGAGAGGCTCTCACAAAGATCGTAGTTTCTGCCCTAAAGACGACGGCAAGCCTCGACAACAAGGACAACTGGCTCAACCCCACTGAGgAAGGGATCTCTTCACACGACGAGAACATAAAGTGTTTGAATCTGGCAGTGAAGGCTTTAATGGATAAAAGAAGCACACAAGCTGAAGACAGCTCAGAATTTGCAGGCCGATCCGGCAGCGCCGCTCTGAAACGGGACGCCGCGGGCCGATTGAAGACCAAAGCCACTGACCCCTTCCCTCCTTTCCCTCTTCCCTTCGGACCTCACCTTATTCCAGTCACGTGTGACGGAGACTGCTGTCAGAAACAAACAGCTTCAAGCCTGAAAGAGACTCTCTTGTCTAAAGACAATGCAcacttttctcctccaaacagaACAGAGCCCCAGCCCACAGATACACATCAGCAAGGAGAGGCAGCCAGCATATCAGAAGAGCTTAAAGAAAACGATAGAAGAAATGGAGAGAAGTACGGCAGTATATCCACCAATGATGTGCTGGACTGCCTGCTGCATCCTGACGTCATAAGCCTGGTTACACAACTGATGATTGACAGACAAAGGGAGCTTGACCCAAAATGAGGAACGCTTCTTTTTTAAGACAGAATTATTTTGGTATATAAACATGCTGTAACTAATAAAGGGGGCATAATAAAAGGATGACAATTGTGTTAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231304 lncRNA downstream 391330 29019154 ~ 29019560 (-) True G170881
TU231298 lncRNA downstream 451880 28956460 ~ 28959010 (-) True G170875
TU231273 lncRNA downstream 617015 28793272 ~ 28793875 (-) True G170858
TU231034 lncRNA downstream 983203 28427477 ~ 28427687 (-) True G170685
TU231008 lncRNA downstream 1219765 28188488 ~ 28191125 (-) True G170661
TU231376 lncRNA upstream 118636 29550060 ~ 29566450 (-) True G170932
TU231387 lncRNA upstream 337224 29768648 ~ 29776325 (-) True G170938
TU231380 lncRNA upstream 403611 29835035 ~ 29836921 (-) True G170936
TU231381 lncRNA upstream 403611 29835035 ~ 29847918 (-) False G170936
TU231409 lncRNA upstream 502619 29934043 ~ 29991508 (-) True G170952
XM_007227930.3 mRNA downstream 59675 29342297 ~ 29351215 (-) True rab20
XM_022680521.1 mRNA downstream 175141 29169686 ~ 29235749 (-) True col4a1
XM_007227927.3 mRNA downstream 330938 29061918 ~ 29079952 (-) True LOC103034135
XM_007227944.3 mRNA downstream 1083465 28312499 ~ 28327425 (-) True pdzk1
XM_022680513.1 mRNA downstream 1161625 28181004 ~ 28249265 (-) True st6gal2
XM_007227920.3 mRNA upstream 96953 29528377 ~ 29738451 (-) True sema5b
XM_022680526.1 mRNA upstream 411125 29842549 ~ 29961255 (-) False adcy5
XM_015606951.2 mRNA upstream 411125 29842549 ~ 29961255 (-) True adcy5
XM_007227914.3 mRNA upstream 531693 29963117 ~ 29975924 (-) True hacd2
XM_007227913.3 mRNA upstream 609429 30040853 ~ 30050404 (-) True LOC103030131
TU231269 other downstream 723211 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 1507991 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 3505408 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 3901474 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 5086385 24312583 ~ 24324505 (-) True G169980
TU231746 other upstream 2468924 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 3327094 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 3742629 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 3782898 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 5505881 34937305 ~ 34959712 (-) False rftn2

Expression Profile