RNA id: XM_007260412.3


Basic Information

Item Value
RNA id XM_007260412.3
length 1433
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC103030840
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 27836324 ~ 27843553 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATTATTCTCTTTATAATGTTTTGTAACTTTTACAGGACGCTATCCTCTGTCTCGTATATCGTGCTAACTTGTGCGTCCTGCAGTTACAGTCAAGTCTGGAGTAACGGGATGAACAGGACGTGATCCTACTAGCCAATCCTATCTGAGGATAGGGATCCTACTAGCCAATCCGAGCACAGGAGGCGGAGTTTTCCTGAATACGGGTGTGAAATACAACAGGTTTTCTGCACTGGCGAAAGTCCCACTCGACTTCGGCACTGTAATGGCTGCAATGTTTACGTGCTGTCTGGGCTGCTGCGGCGATGGGGCATCGGGCCAGATACCCCTCAAAGAAATGCCCACAGTACAGCTGGACACTCACCACATGGGGACGGATGTGGTCATAGTGAAAAGTGGGAGGCGGATATGTGGGACTGGAGCTTGCCTCGCCAACGCCCCTCTCCACCAGAAcaagagctactttgagttcaAGATCCAGTCAACGGGTGTGTGGGGAGTAGGGGTAGCCACACAGAAGGTGAATCTGAACCAGGTTCCTTTGGGTCGAGACAGTCACAGTTTGGTACTCAGACATGATGGCTCGGTCTACCACAACAATGAGGAGAAGAACTGCCTACCAGCCAACAGCCTTCCTCAGGAGGGAGATGTAGTGGGTTTAACCTATGACCATGTGGAACTGAACCTGTATCTTAATGGGAAGAATATGCAGTGTCCAGCGACAGGCATTCGAGGCACTGTGTTCCCTATAGTTTACGtggATGACAGTGCTATCTTAGACTGCCAATTCAGCGACTTCTACCATCCTCCCCCCCAAGGCTTTGAGAAGATCCTGTTTGAACAGCAGATCTTTTGAAGCTGTGGACACACTCAAAGAGATGCTGCCCACAAGGCCAAGAGTCGAGCGGCAGTGTTAGAATGGATGTAAACTTACTTCTGACTTCTTGCCATTTCGCGTCTGCCTTCTCtgttgctgctactgctgccGCCATTGTATATAGGAGACAAGCCagttttgtgtgtgagagagtgtatttagtttgtgtgtgtgtgagggaaaaATTGTTAGCAAAACACTATCAAATATCTGTTATTCAAAAAAATGCCATAtgaacatatttaatttttattttaggtgcaATACATATCATACTTTTATATCACAATCTTTGTTGGTATGTTTCTtagatttaaaacaatacatatttaatttatttaactttagttttattttatgtttttgtctaAAAAAAACCTACATTCCCAAACACTACAGTAAGTGAACAGAAGTGTGTGGATTCTCCAGGAAAGCTGGTCAAACACATCATCAATGTTAGtgacttgttttatttacactatttatGTATTATCATTGAAAACTGAACCAAATCTTGTCAAAGTCTGAGTAAAAGTGATTTATATGCTGATGCggaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651381.1 lncRNA downstream 215537 27617687 ~ 27620787 (-) True LOC111194936
TU230881 lncRNA downstream 215541 27617745 ~ 27620783 (-) False LOC111194936
TU230868 lncRNA downstream 338685 27496098 ~ 27497639 (-) True G170549
TU230862 lncRNA downstream 355902 27479901 ~ 27480422 (-) True G170548
TU230859 lncRNA downstream 360189 27473202 ~ 27476135 (-) True G170545
TU230907 lncRNA upstream 2419 27845972 ~ 27851191 (-) True G170582
TU230934 lncRNA upstream 18603 27862156 ~ 27862552 (-) True G170603
TU230942 lncRNA upstream 39127 27882680 ~ 27889677 (-) True G170611
TU230943 lncRNA upstream 45381 27888934 ~ 27889677 (-) False G170611
TU230998 lncRNA upstream 331782 28175335 ~ 28175654 (-) True G170657
XM_007260410.3 mRNA downstream 851 27824339 ~ 27835473 (-) True LOC103030092
XM_015608619.2 mRNA downstream 12961 27815809 ~ 27823363 (-) True gtpbp8
XM_015608620.2 mRNA downstream 12968 27815809 ~ 27823356 (-) False gtpbp8
XM_015608618.2 mRNA downstream 20564 27810358 ~ 27815760 (-) True slc10a2
XM_015608615.2 mRNA downstream 27516 27805888 ~ 27808808 (-) True LOC107197926
XM_007260403.3 mRNA upstream 46194 27889747 ~ 27894887 (-) True LOC103028198
XM_022680673.1 mRNA upstream 56638 27900191 ~ 27902850 (-) True LOC111194963
XM_022680510.1 mRNA upstream 253906 28097459 ~ 28153647 (-) False uxs1
XM_007227947.3 mRNA upstream 253906 28097459 ~ 28146553 (-) True uxs1
XM_022680514.1 mRNA upstream 337451 28181004 ~ 28249266 (-) False st6gal2
TU230416 other downstream 1930842 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 2326908 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 3511819 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 4940892 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 5477917 22338439 ~ 22358407 (-) False man1a2
TU230949 other upstream 57241 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 842497 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 4056795 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 4914965 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 5330500 33174053 ~ 33176284 (-) True G171553

Expression Profile