RNA id: TU230943


Basic Information

Item Value
RNA id TU230943
length 550
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G170611
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 27882680 ~ 27889677 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttataagaCTTTTATTAACAAAGATAaactcaaacacacagacaacacactCGCTCAATTCTTTTCCTGTTTGACTTTTGGACTAAAAAAGGCAGACATGCTCTTCATTCCAGATTTGTCCACTTTGGCCAGAGACTTCTGTGCTGCAGTCATCTTCTTAGGAGCTTTTCGGGCGAAGTCGGAGCTGTTGAATTTGGTGTAGTCTTCTCCCGCCTCAACAGGTTTATCAGACAGTTTCCTTTTCTGTTAAATACGAGACAACACTTACAACACCAGCAGACACGCATGAAACTAACTCTACCAAGCATGTCCAGCGCCACGCTTGACGACCGTCGTTGCTGTGGAAATTGTAGAGCTAAAGTGGTGTATTTAGTAACATCACAGCCAGAACCCTGGGGATTGTGGGCTAAGGTAAATATCAAACTTTAAAATTTGACTGACATTCCAAAAGTAGGTGGAAAATACCATCACAAAAGCCTCAGTTAACCCATAGCTTTATAGCTGGACCAGATAACCATGtttcatttataatgtttttctaAGAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230934 lncRNA downstream 26382 27862156 ~ 27862552 (-) True G170603
TU230907 lncRNA downstream 37743 27845972 ~ 27851191 (-) True G170582
XR_002651381.1 lncRNA downstream 268147 27617687 ~ 27620787 (-) True LOC111194936
TU230881 lncRNA downstream 268151 27617745 ~ 27620783 (-) False LOC111194936
TU230868 lncRNA downstream 391295 27496098 ~ 27497639 (-) True G170549
TU230998 lncRNA upstream 285658 28175335 ~ 28175654 (-) True G170657
TU230999 lncRNA upstream 289297 28178974 ~ 28179208 (-) True G170658
TU231008 lncRNA upstream 298811 28188488 ~ 28191125 (-) True G170661
TU231034 lncRNA upstream 537800 28427477 ~ 28427687 (-) True G170685
TU231273 lncRNA upstream 903595 28793272 ~ 28793875 (-) True G170858
XM_007260412.3 mRNA downstream 45381 27836324 ~ 27843553 (-) True LOC103030840
XM_007260410.3 mRNA downstream 53461 27824339 ~ 27835473 (-) True LOC103030092
XM_015608619.2 mRNA downstream 65571 27815809 ~ 27823363 (-) True gtpbp8
XM_015608620.2 mRNA downstream 65578 27815809 ~ 27823356 (-) False gtpbp8
XM_015608618.2 mRNA downstream 73174 27810358 ~ 27815760 (-) True slc10a2
XM_007260403.3 mRNA upstream 70 27889747 ~ 27894887 (-) True LOC103028198
XM_022680673.1 mRNA upstream 10514 27900191 ~ 27902850 (-) True LOC111194963
XM_022680510.1 mRNA upstream 207782 28097459 ~ 28153647 (-) False uxs1
XM_007227947.3 mRNA upstream 207782 28097459 ~ 28146553 (-) True uxs1
XM_022680514.1 mRNA upstream 291327 28181004 ~ 28249266 (-) False st6gal2
TU230416 other downstream 1983452 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 2379518 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 3564429 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 4993502 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 5530527 22338439 ~ 22358407 (-) False man1a2
TU230949 other upstream 11117 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 796373 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 4010671 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 4868841 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 5284376 33174053 ~ 33176284 (-) True G171553

Expression Profile