RNA id: XM_007260410.3


Basic Information

Item Value
RNA id XM_007260410.3
length 2673
RNA type mRNA
GC content 0.43
exon number 17
gene id LOC103030092
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 27824339 ~ 27835473 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGTCCACCCTCGTTAGATGGACCTTCTCGATTTGAGGAACACACACCGTGCAGCTTTGAGTGCTGCAGCCATGGCAGAAAACGGAGCATTGGAAAACCACCgtataaaaagctttaaaaacaaaGGACGTGATGCAGAGGCAATGAGAAGACATCGGAATGAAGTATCCGTAGAGCTGAGAAAGAATAAAAGAGATGAGCACCTGCTGAAGAAAAGGAATGTTCCACAGAGTGAGAGTGCAGATGACTCTGATGTAGACAATGATCTTAAAGGACAAAATTTAACCCTGGAAACCATCTTACAGAATGCCTCCAGTAACAACAATGTGTTGCAGCTCAGTGCAGTACAAGCAGCCAGGAAGTTGCTGTCCAGTGATAGAAACCCTCCTATAGATGATCTGGTTCGATCTGGAATCCTGCCCGTTCTGGTCAACTGCCTGGATAGAGatgatcaCCCTTCTCTCCAGTTTGAGGCAGCCTGGGCTCTTACGAATATTGCTTCTGGGACATCAGCTCAGACACAGGCCGTGGTCCAGTCCAATGCAGTGCCACTGTTCCTGAGACTGCTCCACTCCCCACACCAGAATGTGTGTGAGCAGGCAGTGTGGGCGCTGGGCAACATCATTGgaGATGGGCCTCAGTGCAGGGATTATGTCATCTCTCTGGGTGTAGTAAAGCCTCTGCTGTCCTTCATCTGCCCTACCGTACCGTTGTCCTTTCTACGCAATGTCACCTGGGTCATCGTCAACCTCTGCCGCAACAAAGACCCACCACCACCCATGGAGACAGTgcaggagATTCTTCCCGCATTGAGTGTCCTAATATACCACACTGATATTAATATTCTGGTGgacacagtgtgggcagtgtcatATCTGACAGACGGAGGTAACGAGCAGATCCAAATGGTGATTGAGTCTGGAGTCGTGCCTTTCCTAGTCCCTCTGCTCAGTCATCAGGAGGTTAAAGTTCAGACGGCGGCCCTGAGGGCGGTGGGGAACATTGTCACAGGAACAGACGAACAGACGCAAGCAGTTCTCAACTGTGATGTTCTCTCACACTTCCCCTTGCTGCTCACACACCCCAAGGACAAAATCAACAAGGAGGCAGTATGGTTCCTGTCCAATATCACAGCAGGAAACCAGCAGCAAGTCCAAGCTGTGATTGATGCTGGCCTCATCCCTCTGATCATACACCAGTTAGCAAAGGGTGACTTCGGGACTCAGAAAGAGGCAGCATGGGCCATCAGCAACCTCACTATTAGTGGCAAGAAAGAGCAGGTGGAGTACCTGGTGCAGCAGGGCGTGGTGGCTCCTCTGTGCGATTTGCTGGTGGTGCGAGATGCGCAGGTGGTGCAGGTGGTTCTGGATGGCTTGAAGAACATCCTGCTGATGGCAGGAGAGCAGGCCAGCACTGTTTCCAACATCATCGAGGAGTGTGGAGGTTTGGAGAAGATTGAGAACCTGCAGCAGCACGAGAATGAGTACATCTACAAGCTGGCCTTCGAGATCATAGACCAGTACTTCTCAGGAGACGACATTGATGAGGACTTGAGTCTGGTCCCTGAGGCAGCGCAGGGAGGAACATTTACCTTTAATCCTCCTGGTGATCTGCAGACCAACGACTTCAAGTTCTGAAGACCGTAAACACACAGGCACGCATAGTGGGGTATATAGGATACTTCAGCTCGCCTTCCACGTTATAAAATATCAAACGATTTTCGCTTTTTTCAGGTGGTCTTTCATGCACACACATCATGCAAATATTTGGTGTTTCTGACCTTGTGGCCATCATGCGCTGTATTTCTGCTCTGGGatggacttttatttttatttttactttttctttttttaatcgtTTAGCTAAGACATGGGTTTTatgtataaaatgaaaaaaattgtgtatttctgagttaaatttaaaacactttagcTATAGAGGACCAATCAGCAAAATGAGGAATTtcctaaatatatttaatttgttttatatcaaATTGCACTGAAATGACTcttgtgtgcatttgtgttttCAGAGGACTTCTTTTTGTCACTTTTTATATGAGAAAAACTGTCCTTACAAGCCTTACATTaataacttattatttttatttcattttattcagtttGTGTAAGGAATgcatattttcatgtttttcatgagcgtgtatatacatatatattgtttgCAGGCTCCCACAAACACTCATATGCACATGTAGTATGGCATACAAACGCAttatttttcatgcatttgtgtgtgtgagaaattttattattatccagATTGAGCCacttcaaacatatatttttcagtCTTGTATCAGACAGTGATACGAGCTTAAATCCATTGCAAGATTTTTCCTTGCAGCAAcgaaattcattcatttttgtttttgttacttGTTCTAAAATTATGTATTTGGGTTAACTCTAGTCTGAACTCTTTAACTTGGCTCCTCATTGTTGCTCAAGtcttgtgctgaataaaagCAAGATTGAGTCGCTTTTCACAGCAGTGTATTCACTTGTGATGTAAAATAGGGATGGACAATACCATGTTTTCCTAATTAGAGTTGTAATGATTCATAAATTATTTCAGAATTTGATTTAGTATGATACTGTGGTGTCTCAGCAattctgtaaaatattaaataaaattttgtaTCCTCTA

Function

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K23583 KPNA3_4; importin subunit alpha-4/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651381.1 lncRNA downstream 203552 27617687 ~ 27620787 (-) True LOC111194936
TU230881 lncRNA downstream 203556 27617745 ~ 27620783 (-) False LOC111194936
TU230868 lncRNA downstream 326700 27496098 ~ 27497639 (-) True G170549
TU230862 lncRNA downstream 343917 27479901 ~ 27480422 (-) True G170548
TU230859 lncRNA downstream 348204 27473202 ~ 27476135 (-) True G170545
TU230907 lncRNA upstream 10499 27845972 ~ 27851191 (-) True G170582
TU230934 lncRNA upstream 26683 27862156 ~ 27862552 (-) True G170603
TU230942 lncRNA upstream 47207 27882680 ~ 27889677 (-) True G170611
TU230943 lncRNA upstream 53461 27888934 ~ 27889677 (-) False G170611
TU230998 lncRNA upstream 339862 28175335 ~ 28175654 (-) True G170657
XM_015608619.2 mRNA downstream 976 27815809 ~ 27823363 (-) True gtpbp8
XM_015608620.2 mRNA downstream 983 27815809 ~ 27823356 (-) False gtpbp8
XM_015608618.2 mRNA downstream 8579 27810358 ~ 27815760 (-) True slc10a2
XM_015608615.2 mRNA downstream 15531 27805888 ~ 27808808 (-) True LOC107197926
XM_022680493.1 mRNA downstream 328822 27484506 ~ 27495517 (-) True lcmt2
XM_007260412.3 mRNA upstream 851 27836324 ~ 27843553 (-) True LOC103030840
XM_007260403.3 mRNA upstream 54274 27889747 ~ 27894887 (-) True LOC103028198
XM_022680673.1 mRNA upstream 64718 27900191 ~ 27902850 (-) True LOC111194963
XM_022680510.1 mRNA upstream 261986 28097459 ~ 28153647 (-) False uxs1
XM_007227947.3 mRNA upstream 261986 28097459 ~ 28146553 (-) True uxs1
TU230416 other downstream 1918857 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 2314923 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 3499834 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 4928907 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 5465932 22338439 ~ 22358407 (-) False man1a2
TU230949 other upstream 65321 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 850577 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 4064875 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 4923045 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 5338580 33174053 ~ 33176284 (-) True G171553

Expression Profile