RNA id: XM_022680493.1


Basic Information

Item Value
RNA id XM_022680493.1
length 2462
RNA type mRNA
GC content 0.52
exon number 15
gene id lcmt2
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 27484506 ~ 27495517 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttcaaatatacttttattcTGTCACTGAAAATATCAACATCCGGAAACAGGCTGCAGCGTGCTCCTCTTTCACTTAGTGGATGAGAGTGAAGATGCATGAAGCTCCTCCAGTGATCAACAATGTCAgcaagaaaacacacaaacagagagtgGACGCTGCAGTGCAGGGCACCAATGACAGCAGTGTGGTCAGTAAAGTTTCCGCCGCAGCTCAGGGCTACTTTCAGGATGACCTTCTCCAACATTTTGTGTGCAAGGTGTCGCGACGAGCCCCTCTTATCAACAGGGGCTACTACGTCCGCTGGCAAGCTGTTGACCACTGTGTGAAAGGGTTTCTGCGGGTTACTGAGAACTGCGCTGGAAGGCAGATCCTGTCTCTCGGCGCAGGATTTGACTCCCTCTACTTCCGGCTGCATGCAGAGGGAGCTTTGGAGCGTGTTGTGGTGTTTGAGGTAGACTTCCCAGATGTCACTAGACGCAAGGCAGCTTTGATCAAAGGCAATGATCGTCTGAAAGATGCTCTTCCGGACTGGAACCACTTGGAGCCCACTGgccctgtgtgtgtgagcagtgctCAGTATAAGCTGCTGGGTGTGGACGTGCGTactgagagagaggtagaggaggGTTTGAGGGTGGCTGGGCTCCAGTGGGATCGCCCCACACTTGTCCTCTCAGAGGTTGTGCTCACTTATATGGAAACCAAGTGGTCAGACGCTGTTATTGGTTGGGCAGCAAGATCCTTATCACAGGCCTTATTTGTGATGTACGAGCAGATTCGCCCTGACGACCCCTTTGGCCGGGTCATGCAGAACCATTTCCTGAAGCTTAACTCCAAAATCCACGCCCTCTGCCAGTACCCTGACACCTCAGCCCAAACCAAGAGATTCCTTCAGCAGGGCTGGGAAAAATGCACATGCTTGGACATGAACCAGTTCTACTTCAGTCTTCTCTCCCAGGATGAGCAAGAAAGGGTAGAAAACATGGAGCCCTTTGATGAATTTGAGGAATGGCATCAGAAGTGCTCTCACTACTTCATCCTCTCAGCCTCTAAAGGCTCTCTGACCAGCTCTGCACTCCTTGAACCCCCAAAGGAGTCACCAGTTCCCTGGATGGTTCCCAAGCTAGAGGATTTCTCCATTGAAGCACTGCCTTTGGCTGGGGCTCCGTGTGTGGAGGCAGTGGGGATGGCTTCTTCTGTGCTGGAGCCTGGACTGCTGCTCCTCAGCGGGGGGTTTGGGAGAGGAGGCCGAGACACTGCAGCCATGGTGCTGATCAGAGAGCAGACAGAGTGGACTCGTGCTACCGTGGAACTGGAGGGAGATAAAGGTGTGCGGCTGTACCACACACTGACCTCGGTTCCTGGATGGGGTGCTGTGGTTACAGGAGGCAGAACATCTCCACTTAACCCTATTGACAGTGTACTCAAAGTTACCCATCATCTGAGTGACCAACCTGACTCCAGAACTGTTCTGTTGTCTGTGGAAAAGATGGTTTGTACCGGTCAAGCTCCAAAGCCAAGGTGGCGGCATACAGCTACTTTGCTGAATCATAAAGGCAAGAACTACTTGTTTGTGTTCGGAGGACGCACAGAAAAAGAGCCTGTTCTAGGTGATGCACACTTTCTGTGTTTGGAGGACCAGCACTGGACAGATGCAAGGGTACCTCTTGAAGGATGCTTCCCTGAGCCTCGTCATTCTCACTCAGCCTGTGCCTACAGAGGAGGAGTGGTGATATTCGGAGGCTTGGGCCGAGGAGGTGTTCCTCTGGGGGACGTTATGTGGTTGAATGATTCGCCTACAGGCTTTGTGTGGAAGAAGGTGCAGTTGCGACCTGCCCTGGTACCAAGGTATTCCCATTCAGCTCATGTCATCGGTGAGAACCTGGTGGTAGTTGGTGGTGTTTGGCTTCAGGCTGATGGTGTGCCTGGGGTTGCTGTAATAAACTTAACCACTGGAAGCAACATTGAAGTCACCATTGACACATCTTCTGTCCCCTGGCCCCTCATGCTGCATTCCTTCTGCTCAGAGTTGTTGGACTCGGACAGAACTGAGGTGGTACTTATCGGTGGGGGAGGAAACTGCTTTTCCTTTGGGACCCATCTTAATATCCACCCTGTTACATTAGACCTGAGGCCTGTGCTGGGCCACTGACTCAAAACAAGGGACCACCCCATTTCACCCGGGCATCTAGGGTTACTAAAACCAAAGCTTTTAAGAGCATGCTGGACCATGCAGGAAACTAATCAGACACTCTTAACAAGCAATGGTACGACTCCACTGACTTGCCAGCCAATCTTTATTTCAACCAGGACCTCAGTTTAAGTAACAGCCAAAGAGCTCAAATGATGAAGGATGGGGCATCAGCATATCGTTATTTGGAGGAGGGCAGTGGAGGTCGGAGGTCATATAGGGCATCAGCCCCGGAGAGGTGACGGTTCACTCGGTGAGGCGGCGGAAGG

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K15451 PPM2, LCMT2, TYW4; tRNA wybutosine-synthesizing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230862 lncRNA downstream 4084 27479901 ~ 27480422 (-) True G170548
TU230859 lncRNA downstream 8371 27473202 ~ 27476135 (-) True G170545
XR_002651380.1 lncRNA downstream 102992 27378534 ~ 27381514 (-) True LOC111194934
TU230808 lncRNA downstream 339797 27061004 ~ 27144709 (-) True G170506
TU230813 lncRNA downstream 390639 27078539 ~ 27093867 (-) True G170508
TU230868 lncRNA upstream 581 27496098 ~ 27497639 (-) True G170549
XR_002651381.1 lncRNA upstream 122170 27617687 ~ 27620787 (-) True LOC111194936
TU230881 lncRNA upstream 122228 27617745 ~ 27620783 (-) False LOC111194936
TU230907 lncRNA upstream 350455 27845972 ~ 27851191 (-) True G170582
TU230934 lncRNA upstream 366639 27862156 ~ 27862552 (-) True G170603
XM_022680492.1 mRNA downstream 13136 27470248 ~ 27471370 (-) True LOC111194935
XM_007260422.3 mRNA downstream 20553 27448518 ~ 27463953 (-) True LOC103034209
XM_007260423.3 mRNA downstream 48351 27406353 ~ 27436155 (-) True armc8
XM_007260424.3 mRNA downstream 48351 27413218 ~ 27436155 (-) False armc8
XM_007260426.3 mRNA downstream 318244 27148571 ~ 27166262 (-) True idh1
XM_015608615.2 mRNA upstream 310371 27805888 ~ 27808808 (-) True LOC107197926
XM_015608618.2 mRNA upstream 314841 27810358 ~ 27815760 (-) True slc10a2
XM_015608619.2 mRNA upstream 320292 27815809 ~ 27823363 (-) True gtpbp8
XM_015608620.2 mRNA upstream 320292 27815809 ~ 27823356 (-) False gtpbp8
XM_007260410.3 mRNA upstream 328822 27824339 ~ 27835473 (-) True LOC103030092
TU230416 other downstream 1579024 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 1975090 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 3160001 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 4589074 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 5126099 22338439 ~ 22358407 (-) False man1a2
TU230949 other upstream 405277 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 1190533 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 4404831 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 5263001 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 5678536 33174053 ~ 33176284 (-) True G171553

Expression Profile