RNA id: XM_007260426.3


Basic Information

Item Value
RNA id XM_007260426.3
length 2379
RNA type mRNA
GC content 0.51
exon number 9
gene id idh1
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 27148571 ~ 27166262 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGTCTTGTATTCTGAGCCGGAGCAGAGggagctgtgtgtgagtgtactgGTTGAATTGGAGCTGTCTGTCCGAGGGTTTAGTCTACAGCCGGAGGTTGTGTACAGGTTCTCAAAATGTCCCAGAAGATCAAGGCTGGATCCGTGGTGGAGATGCAGGGAGATGAGATGACCAGAGTCATCTGGGAGCTAATTAAAGAAAAGCTCATCTTCCCCTACCTGGAGTTAGACCTGCACAGCTATGACCTGGGCATGGAGAACCGAGACGCCACAGACGACCGGGTGACGGTGGAAGCGGCCGAGGCGGTGCGGCGCTACAATGTGGGAATCAAGTGCGCCACCATCACTCCGGACGAGAACCGCGTGGAGGAGTTCAAGCTGAAGCAGATGTGGCGCTCGCCCAACGGCACCATCCGGAACATCCTGGGCGGAACCGTGTTCAGAGAGGCCATCATCTGTAAGAACATCCCGCGCTTGGTCCCCGGCTGGGTCAAACCCATCATCATCGGCAGACACGCCCATGGAGATCAGTACAAGGCCACAGACTTTGTTGTTCCTGGACCTGGACGAGTGGAGATGACCTACACGCCCAAGGATGGAGGGCAGGCTCTCAAATTCGTCGTTCATGACTTTGAAGGTACTGGTGGCGTTGCAATGGGAATGTACAACACAGACCAGTCCATCCGAGACTTTGCTCACAGCTCCTTCCAGATGGCGCTGTCTAAAGTCTGCCCTCTCTTCCTCAGCACTAAAAACACCATCCTCAAGAAGTACGACGGCCGATTCAAGGACATCTTCCAGGAGATTTACGACAAGGAGTATAAGGCTCAGTTTGAGGCTAAGAAAATCTACTATGAGCACAGGCTGATTGATGATATGGTGGCTCAGGCCATGAAGTCTGAGGGAGGGTTCATCTGGGCCTGCAAGAACTACGATGGAGACGTCCAGTCCGACTCTGTGGCTCAAGGTTATGGCTCTCTGGGTATGATGACCAGTGTGCTGATCTGTCCTGATGGGCGCACGGTGGAGGCCGAGGCTGCACACGGCACGGTCACACGCCACTACCGCCAGCACCAGCAGGGCAAGGAGACCTCCACCAACCCCATCGCCTCTATCTTCGCGTGGACACGGGGACTGCTGCACCGCGCTCAGTTGGATAAGAACCGTGAGCTGCGGGTGTTCGCAGAGGCGCTGGAGGCCGTCTGCATCGAGACCATCGAGGCCGGCTTCATGACCAAGGACCTGGCCATCTGCATCAAGGGCATGGCCGATGTGCAGCGCTCCGACTACCTGAACACCTTCGAGTTCCTCGACAAACTGGCAGATAACCTGAAGATCAAGCTGTCGAGTCAGCCGAAGCTATGAAGCCATCTTTAGTACTTGAATCCACACGCCCACGCCACTCACACCCACACGTCCAGATCTCCAGCCCTCGTCCAGCGCCAATCCACAGGCAGCGGTCAACCTCTTCTCCTCCCGGTCCTGCTGCTGACCaaagacgagagagagagagaactgtgcCACTACTGCTGAGGGTGCACTTTCAGGTGGAATAAATGTGAAAGTGCCTTTGTAAAGGGTTAGGGGTGgtgtatgtacacacacacactaacagacacacacacacacatacaaacatgcacacatgcatacacacactagCACAGTGCTAACCCTTCACACTGTTTTAGCTACACCATGAAgaccatgttttactgcatttcTAATCATATCAATTTCAGTCCCAGTCAGGTGACATTTTAATATTGCAGCATTAATTTTGCACTAGCACTTGTCCAATAGTGCAGAccatagtgtgttttatgtcgGTAACGTGTAGAACATGTTTCAGTCAGTCTGTGCCCGGGTACGTGAACACCCGTTGCcttatgtgtctgtgtgtgaggtCGTTCTATTCCCTGTGTCGCTCCTACAACAACCCGTCCAACGAATTATAATGGAACTActactttaaaggagaaatcggGTGTGAATTTGTACTTGGGTGTAGTGAAATGTGATAACTAGTACAAACTTTTTACatatagcccacctccattcttcTCCATCATTCCAAAATCCAAAAGATTTTatccaatgctcccaacaggcgtacaatgctagtgataggggtatAGCATTGTCCATGttaagaaatcactatttttacaccattaacatcAGTCATTTTTTTTGGCACTGGGATGCTGGGAGGGAATGGAGATGGGCTATTCCACAAGAGTTTGTACTCATTATCTTGTTTCACTACAccacaagtccatttcacactggagttctcctttaactctaTACTACTTTTACACAAATCTGTATGCGATGTTGCTGTGTATCTTgagctaataaaaaaagtggGACCATGa

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006102 isocitrate metabolic process biological_process
GO:0051287 NAD binding molecular_function
GO:0004450 isocitrate dehydrogenase (NADP+) activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K00031 IDH1, IDH2, icd; isocitrate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230808 lncRNA downstream 3862 27061004 ~ 27144709 (-) True G170506
TU230813 lncRNA downstream 54704 27078539 ~ 27093867 (-) True G170508
TU230800 lncRNA downstream 95964 27048035 ~ 27052607 (-) True G170501
TU230798 lncRNA downstream 113965 27032142 ~ 27034606 (-) True G170499
TU230783 lncRNA downstream 176448 26966955 ~ 26972123 (-) True G170485
XR_002651380.1 lncRNA upstream 212272 27378534 ~ 27381514 (-) True LOC111194934
TU230859 lncRNA upstream 306940 27473202 ~ 27476135 (-) True G170545
TU230862 lncRNA upstream 313639 27479901 ~ 27480422 (-) True G170548
TU230868 lncRNA upstream 329836 27496098 ~ 27497639 (-) True G170549
XR_002651381.1 lncRNA upstream 451425 27617687 ~ 27620787 (-) True LOC111194936
XM_007260427.3 mRNA downstream 7362 27087399 ~ 27141209 (-) False plekhm3
XM_007260428.2 mRNA downstream 7362 27101800 ~ 27141209 (-) False plekhm3
XM_015608621.2 mRNA downstream 8751 27087399 ~ 27139820 (-) True plekhm3
XM_007260429.3 mRNA downstream 78566 27063192 ~ 27070005 (-) True fzd5
XM_007260436.3 mRNA downstream 477613 26664027 ~ 26670958 (-) True LOC103038316
XM_007260423.3 mRNA upstream 240091 27406353 ~ 27436155 (-) True armc8
XM_007260424.3 mRNA upstream 246956 27413218 ~ 27436155 (-) False armc8
XM_007260422.3 mRNA upstream 282256 27448518 ~ 27463953 (-) True LOC103034209
XM_022680492.1 mRNA upstream 303986 27470248 ~ 27471370 (-) True LOC111194935
XM_022680493.1 mRNA upstream 318244 27484506 ~ 27495517 (-) True lcmt2
TU230416 other downstream 1243089 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 1639155 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 2824066 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 4253139 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 4790164 22338439 ~ 22358407 (-) False man1a2
TU230949 other upstream 734532 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 1519788 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 4734086 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 5592256 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 6007791 33174053 ~ 33176284 (-) True G171553

Expression Profile