RNA id: XM_007260428.2


Basic Information

Item Value
RNA id XM_007260428.2
length 2393
RNA type mRNA
GC content 0.56
exon number 8
gene id plekhm3
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 27087399 ~ 27141209 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGCCGCGGCTTCTGTTCCCTCCGGCGGCAGAGGACCTGACTGTGACAGTTTGTAAACAGATTCAGGATGTTGATGCCTGGGGGGACAATTGTTCCTTGTGCCATGTTCAATTTGCTTTCATTCTGGAGTTTCTGCCGCCTGACCTAAGTGACTTGATTTTCTTGACACCCAGGAATCTCTAAAAGTGCGGCAACACCTAGGCTAAACCATGCCATGACTACTTTTGAAGACTGCCAGACCATTTTTAGCCCTCCAGCTTTTCTTAACTTAGCACCGAGAGTTATGGTTGGCCCAGCAGTCTATGCCTGTTCAGTTGCCTGGTTAACGGCGTTGTCTTAAAGAGCTCTTGTTTATCCTGGAAGGGATTCGAGCCTTCGAGGAGTTTCAGTATTGCCAAGCTTCCTCTTGGCCTCAGACAGCAGATGTTCTATCTGTGTTGTCTTGAGGCCTTTGGATCCCCTCCTTCTAAGACTCACGCACACCAGCTAGTCGCCTACATACTCTGCCCTTTCACCTCCGCTCTGCTGCGAAAGCTGTGGAGGTGATGGAGGGCTTGGAGGTGGAAGACATCAGTCCGGCCCTGGAGGTAACGGAGGACTACTTGCACTGTCTGGATGCCAGTCAAGAAGATGGGCAACTACGGCCTGCCAAGTTGAAGGAGGTTTCAACTCTAGACAAGTTGAACTCCAGTGGGGTATGGGGCTTGCTTACTGGGGAACAGTCAGAGATATCACCTCGTAACATAGCTTGGGGAGAACAGACCTCCTCCTTTAGTGTACTTGGATTAAGAAATGGAAAGAGGAACCGAGCCCGCTCTACCAATGATCTGGCGGCCCACGCCAAAGAGACCAACTCCACAAGCACTTCTAGTGGGGGCTTCAAGCGGGGGCACAACAGATCACGCTCAGATGTCAACTACCGAACCTTCACGGATAACGGCGTGCCAGCTGTTGACAAGAACACACTCAAGAACATGGCACTAAACGACCAAAGGGAAGATAACAAGGAGAGTAGCCCCAGCCTTGTTAAGCAGGGCATATTGGAACAGAGGGAGGGTCCGTGGGGCCGCTGGAGTGCCTGCCACGTGGAGCTCACTCCCTGCGAACTGCGCCTCTATAGCCTGGACAACAGTGGGAACAGGCAACTGTGTGCTGCCCTCTCACTGTCGCACTGCCAGGGTGTGGGCGCACCGCACCCGCAGGATGGCCGAGTGCTGCAGGCCCTCTTCTTCAACAGCACCCGCCTGCAGCTGCGTGCCCCCTGCCAGTGGGAGGCATTGGAGTGGCGTAGGCTTCTTTGGGAGCGCGTCCTTGCCGCTCGGCCACCCCACAGTCAGGGGGAACCTCCAGCACCTTGCGAGCCAGTTCCAGACTCTGCCACCACGCGTCCCCTCGTCCGTCCCACCGCACTTCCCCTGTTCACCCAGCGCTGTGCTGATGTCCTTAAGGCAGGCCTCCTGTATCAGCTCAGTGACCTCAACAACTGGAGCGCCTTCACTTTTGTACTCAGTCGCACCCAGCTGCAGGCCTTCCCCACTGAAGGCCGAGGCCCTGTCAATGAACCAGTGCTGCAGTTCCCTCTGGCATCCTGCCTAGCTGTGCAGAGGGATGAGGCAGATGGCGGCAACTGTGCCCGCTTCCAGGCCATTTTCCCAGATCAGGTGCTTCGTCTGAGGGCAGAGAGCGAAGCAAAGGCCCAGGACTGGGTGGAGGCTCTGCGGACAGCTGTGGCTGCCCAGAGGCCGCAGGGAGAGAGCAGCCATCAACTAGCTCCCCCAGGAGTGCTTATGAGGAGCAAGCCGACACGAGAACGGTGGCAGAAGGAGGCCCACAGAGCTAAACGGCAGTCTGTCACTACCAGCTTCTTAAGCATCCTCACCTGCTTGGCTGTGGAGAAAGGCCTGACTGCCCAAAGCTTCAGATGTGCAGGATGTCAAAGGCCAGTGGGTTTGTCTCGAGGCAAAGCTAAGGTCTGCCACTACAGTGGATGGTACTATTGTCAGAGCTGCCACCAGGACAACCTCTTCCTTATTCCTGCTCGACTGCTGCACAACTGGGACACCAGTAGACATAAGGTGTCCAAACAAGCGAAGGAGTTTCTAGAGTTTATCTACGAGGAGCCCTTGCTGGATGTGCAGCAGTTGAACCCGTGTCTGTACGAGCATTCAGAACCACTGGCTGCTGTGCTCAAGCTTCGGCAGCAGCTCCAGTCTCTCAGGGCTTACTTATTCAACTGCCGTGCCACAGTCGCAGAGGACCTGCGCCGTCGgatTTTTCCAAGGGAATACCTCCTACAGCACATTCACCTGTACTCGCTGGCTGACCTTCAGCAGGTCTGAAAGTCCCTTTAAATTGGGTAGAATCCACCTCCGTGAGGATGACGAAAGGCCagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230813 lncRNA downstream 7933 27078539 ~ 27093867 (-) True G170508
TU230800 lncRNA downstream 49193 27048035 ~ 27052607 (-) True G170501
TU230798 lncRNA downstream 67194 27032142 ~ 27034606 (-) True G170499
TU230783 lncRNA downstream 129677 26966955 ~ 26972123 (-) True G170485
TU230620 lncRNA downstream 290681 26810901 ~ 26811119 (-) True G170353
XR_002651380.1 lncRNA upstream 237325 27378534 ~ 27381514 (-) True LOC111194934
TU230859 lncRNA upstream 331993 27473202 ~ 27476135 (-) True G170545
TU230862 lncRNA upstream 338692 27479901 ~ 27480422 (-) True G170548
TU230868 lncRNA upstream 354889 27496098 ~ 27497639 (-) True G170549
XR_002651381.1 lncRNA upstream 476478 27617687 ~ 27620787 (-) True LOC111194936
XM_007260429.3 mRNA downstream 31795 27063192 ~ 27070005 (-) True fzd5
XM_007260436.3 mRNA downstream 430842 26664027 ~ 26670958 (-) True LOC103038316
XM_007260437.3 mRNA downstream 438184 26653174 ~ 26663616 (-) True LOC103038625
XM_022680488.1 mRNA downstream 453810 26637576 ~ 26647990 (-) True LOC103038930
XM_022680484.1 mRNA downstream 849534 26226457 ~ 26252266 (-) True LOC103029246
XM_007260426.3 mRNA upstream 7362 27148571 ~ 27166262 (-) True idh1
XM_007260423.3 mRNA upstream 265144 27406353 ~ 27436155 (-) True armc8
XM_007260424.3 mRNA upstream 272009 27413218 ~ 27436155 (-) False armc8
XM_007260422.3 mRNA upstream 307309 27448518 ~ 27463953 (-) True LOC103034209
XM_022680492.1 mRNA upstream 329039 27470248 ~ 27471370 (-) True LOC111194935
TU230416 other downstream 1196318 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 1592384 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 2777295 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 4206368 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 4743393 22338439 ~ 22358407 (-) False man1a2
TU230949 other upstream 759585 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 1544841 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 4759139 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 5617309 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 6032844 33174053 ~ 33176284 (-) True G171553

Expression Profile