G170499


Basic Information

Item Value
gene id G170499
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 27032142 ~ 27034606 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU230798
GTTTCAACACACGTCTTTTTTATGAAATAGCTGCCAAAAATGCAACAGTCATGGTAGACTAACAACATATATTTGTACCCTCTATTTACGCGTTGATGCATCAAATACAAAGACACTGAATCCATATCCATTGTGACACAATGCAAAAATAACCATAGAGATATCAAAGTTAAAAAtgatatacaaaaaaaacaagtttaaacaTGCCATATTTGCGAAGAGAGATATTAATACTTGTTATAGAGGATGATACTCATTTCAGTTCTGTATGATGAAaaaaacaaacaaacagaagaatTCAAGTCCAAGAAACGTAAAAATCTTgaccatgtttaaccatttcagATTAAATAGCTAATTAATCTCCAAACTGAGCCTCACCACAAAGGTTTGGTTGTGCAAAGATAGGAATCACTGTGGTGGGCCTGCGAGAGCAGCCTGAGCCAGGTTTACAGCCTTGATTTCAGCAATAATGAGTTCCACAAACTCAACGTCTGGATCCCCTGCACCTTGTGACTTGCTCATCTTGTAGAAAATGTGCAGAAACTAGATACTTAACGGAAGTGCATTAAATCGCACAATCCTGCTGTACTGTGGTGGTTAAAACACTCAGTACTGTGCTGGCAACAGAATCATCTAATTTAAATAACCGTGTAATAAATAACTACAAATTATGGTCGTTTTGAGATGGTCCCTAACTCTAAGCACAGAGACAGTGCAGGAGCTGAagcttaaaaaacatatatacatacatacatgtgaAAAATTCAATGATTAGTTGTGACATTAGTCTGTTTTCAGCTTTATGTTGGTGTAACTAATCTAGTAATAATGAACAGAAATGCTATacctctttattatgcagtggtCTCTGTAGcagcttagcatagcttagcttCACTGTACTTGACTAAAATACATATTGTCCTCTATTTTGTAGATCTGTGTTCAGCTCAACACAGCTGCATTTCAAATGTAGTAAAGCAGCTATAGAATACACAGCATGGAGTTTTGGTCTGCCTTTTTAAATATTCCTTCTATATGCAGATACTAGCTATCATACTATTGGTCTTCATAGCTGCTTAGAATAGCTTAGCTTTGCTATACAGGAGCTTAAACACAACTATTTATTTTGTGAAAGTCAACGTGTGAAATCTGAGGCTCGGttctgtttttaacattttcaagcatgacatttaaatatttagttttgggaatgctacctttaatattttaatgatattagTAGCCTATAAATCTATCTGGGAACGTTGGGTGAGATACGTTTTAATAACACTGTGAAGCAAATCATTATTGTGTTACACATTTTCAGAATATGAAACgttatttctgtaacattacaggctaATCCCCCTGATCATGATTGCTTATCATTTTTATAGCATTCTCTGTTATTGAGTTAGGTTAATGTTATGTCAGGTTCCAGACCAGGGTTCCATTTCCTGACTGGGCAAACACACCACTTCTTCGACCTATGCTGGTTTCTGTATCTGATTAGCTTAGCGTAGCTTAGCTTTAGTGTGAAAGAGCGGAAACATAACGCTTTTATTCTGAGAGTTGATGTGTGAAACCAGATGCACAGACGCACTGTACTGTGAAAACATCCAAAAATATACAAACTTTACCTCAGACAGCTTTTTGTAGGCATACTGTCTTGAAGCAATTCATATATTTAGCTTAGCTCAAATGCACATTCTAGCTATCATAAACAAATTGGTGGTTGAGTTTTACTGTACTCAGGACAGATTTAATGcattaattggttaattgaGTTAGGTTAGTATAGTGCAGTGAAAACACCACTTCCTCTGTGTTCCTATCCCTGACTGGGCAGCTTAGCTCAAAAGCACATTCAGCTAGGTTGTCTATATTTTACCTGCCactgttttaatgtattaatttagtTGATTAAGTAGCTTAGTGGGTAGATTCACCACCCGCCTTGTTCCCTTACCTAACTgggcttagcttagcttaactgtACAAGCgctaacagtttttttttttatgatagtAGATGTGTGAATTCTGACTCTGTTTTGtgagaactatttaaaatatacactttGTAGCACAAATGGCTTTTGTGGCATGCAGCAAAACATGTATTCAGCCTAAAAGCACATTCTAGCTAGCATAAACAATTAGCACAAATGCTAACCATGCTGTTGTTCCTGTATctgcttagcttagcttgaCTGTATGAGCTCTGAATTTTAATTTCCTaaatttctcttttcttctcaaaGAGGGTCCTAAAATCTATACATTTTACCTCAGACGGTTAGCATTACCCAAGTTTTTATACTAGTGGTTAAGTTTTTACTAAACCAAGTTTATTACTAAAGCAGCCTGAAACAGGAGCACCGGAGCACTttcttcaccaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230798 True 2410 lncRNA 0.36 2 27032142 27034606

Neighbor

gene id symbol gene type direction distance location
LOC103038316 NA coding downstream 361184 26664027 ~ 26670958 (-)
LOC103038625 LOC103038625,LOC108430498 coding downstream 368526 26653174 ~ 26663616 (-)
LOC103038930 NA coding downstream 384152 26637576 ~ 26647990 (-)
LOC103035301 NA coding downstream 1000757 26029478 ~ 26031385 (-)
LOC111194933 NA coding downstream 1251141 25774326 ~ 25781001 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 coding upstream 28586 27063192 ~ 27070005 (-)
plekhm3 plekhm3,LOC107733641,LOC107551948,LOC107663884 coding upstream 52793 27087399 ~ 27141209 (-)
idh1 idh1,LOC107663883 coding upstream 113965 27148571 ~ 27166262 (-)
armc8 armc8 coding upstream 371747 27406353 ~ 27436155 (-)
LOC103034209 rab5b,LOC108430508,LOC107551955,LOC107738511,LOC107598172,LOC107698530,LOC108266395 coding upstream 413912 27448518 ~ 27463953 (-)
G170485 NA non-coding downstream 60019 26966955 ~ 26972123 (-)
G170353 NA non-coding downstream 221023 26810901 ~ 26811119 (-)
G170350 NA non-coding downstream 313370 26718512 ~ 26718772 (-)
G170349 NA non-coding downstream 343860 26687264 ~ 26688282 (-)
G170308 NA non-coding downstream 428512 26563644 ~ 26603630 (-)
G170501 ccnyl1,LOC107733650,LOC107663902 non-coding upstream 13429 27048035 ~ 27052607 (-)
G170506 NA non-coding upstream 26398 27061004 ~ 27144709 (-)
G170508 NA non-coding upstream 43933 27078539 ~ 27093867 (-)
LOC111194934 NA non-coding upstream 343928 27378534 ~ 27381514 (-)
G170545 NA non-coding upstream 438596 27473202 ~ 27476135 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 779876 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 1126526 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 1522726 25501940 ~ 25509416 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other downstream 2679234 24307650 ~ 24352908 (-)
G169567 NA other downstream 4136710 22894768 ~ 22895432 (-)
LOC111194963 NA other upstream 865585 27900191 ~ 27902899 (-)
G170854 NA other upstream 1651444 28686050 ~ 28687679 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 4861226 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 5723901 32758507 ~ 32776018 (-)
G171553 NA other upstream 6139447 33174053 ~ 33176284 (-)

Expression


Co-expression Network