G170350


Basic Information

Item Value
gene id G170350
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 26718512 ~ 26718772 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU230616
aatagccaccctttgctctgattactgctttgcacactcttggcatcattctctcaatgagcttcaggAGGTGGCCaactgaaatggttttccaacagtcttgaaggaaggagttcccagaggtgtttagcacttgttggcccctttgccttcttcactctgtgattCAACtcccccaaaccatctggattgggttcaggtccggtgactgtggaggacaggtcattttttgttgagtacataaaactccacatgtgttca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230616 True 261 lncRNA 0.47 1 26718512 26718772

Neighbor

gene id symbol gene type direction distance location
LOC103038316 NA coding downstream 47554 26664027 ~ 26670958 (-)
LOC103038625 LOC103038625,LOC108430498 coding downstream 54896 26653174 ~ 26663616 (-)
LOC103038930 NA coding downstream 70522 26637576 ~ 26647990 (-)
LOC103035301 NA coding downstream 687127 26029478 ~ 26031385 (-)
LOC111194933 NA coding downstream 937511 25774326 ~ 25781001 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 coding upstream 344420 27063192 ~ 27070005 (-)
plekhm3 plekhm3,LOC107733641,LOC107551948,LOC107663884 coding upstream 368627 27087399 ~ 27141209 (-)
idh1 idh1,LOC107663883 coding upstream 429799 27148571 ~ 27166262 (-)
armc8 armc8 coding upstream 687581 27406353 ~ 27436155 (-)
LOC103034209 rab5b,LOC108430508,LOC107551955,LOC107738511,LOC107598172,LOC107698530,LOC108266395 coding upstream 729746 27448518 ~ 27463953 (-)
G170349 NA non-coding downstream 30230 26687264 ~ 26688282 (-)
G170308 NA non-coding downstream 114882 26563644 ~ 26603630 (-)
G170280 NA non-coding downstream 224765 26493532 ~ 26493747 (-)
G170276 NA non-coding downstream 243449 26474786 ~ 26475063 (-)
G170261 NA non-coding downstream 331479 26382172 ~ 26387033 (-)
G170353 NA non-coding upstream 92129 26810901 ~ 26811119 (-)
G170485 NA non-coding upstream 248183 26966955 ~ 26972123 (-)
G170499 NA non-coding upstream 313370 27032142 ~ 27034606 (-)
G170501 ccnyl1,LOC107733650,LOC107663902 non-coding upstream 329263 27048035 ~ 27052607 (-)
G170506 NA non-coding upstream 342232 27061004 ~ 27144709 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 466246 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 812896 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 1209096 25501940 ~ 25509416 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other downstream 2365604 24307650 ~ 24352908 (-)
G169567 NA other downstream 3823080 22894768 ~ 22895432 (-)
LOC111194963 NA other upstream 1181419 27900191 ~ 27902899 (-)
G170854 NA other upstream 1967278 28686050 ~ 28687679 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 5177060 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 6039735 32758507 ~ 32776018 (-)
G171553 NA other upstream 6455281 33174053 ~ 33176284 (-)

Expression


Co-expression Network