G170261


Basic Information

Item Value
gene id G170261
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 26382172 ~ 26387033 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU230510
ATGATCTGAGTGTTTTACTTTCAAGAAAAACAGAACCCAAAACTTAAGAAtacactttaatattaatcactAGTCACTATGAAATGCTTTCAAACCAAGGTGAGAAAAAGAAGTGTCCTTTGGTAAGAGTTTTACTGTAAAGCAGTTAGGGATAAGGTAGTTGAAGATCATTGGTAAAAACTAAATCTGTGCAAAACTAAAATTATTCTGATAGAATGTAACAGGACAAAATATCCTAAAAACTAGACTAGAACTGCACTGAAATGGATGGAAATAAACTCAAAtgaaaaatcacttaaattaaaaaacatacaaatgcaAGATGGATTGATTGAATCGCGGCCCAGAGCACAATGACCCAACATCACCTGCCAAACACCAACATTCCAGTGCTGACCATTGTCTCTGGACTGTTTAGAacaattctagaacagtgtgaatactGGGAGTAGTATTCTATAATAGTGTGAATATTGGGAGTATTCCAGAACATTGTAAATATGAATATGTGTAGTATTCTAGTATCAATAGGGTGAATATTCTAGAACAgggatattttaaaatattatatgggGGAGTATTCTAGAAGTGTGAATATCGGGAGTATTCTAGAACACCATGAAGGGGAGGGACATTTCAGAACAGTGTAAATACTAGAagtattctagaacagtgtgaatactTGAGAGTATTCTTGAACACTATAAATGGGAGTAATATACcagaacagtgtaaatatttggAGTATTATAGAACAGTGATTACTGGGGTATTCTGAAAACACTAAGTATGGAAGGAATTttccagaacattttaaatattgggAGTATTCTAGAACATTGAAAAGGGGAGGGATATTCTAGAACAGTGCATTCTAGAAGAGTGTGAACACTGggagaattattattaatagtgtgAATAAGGGGAATATTCTAGATCAGTGTGAATTATAGGTAGAATTCTAGAGCACTATGAATGTGATgaatattctagaacagtgtggatATTGCTGGTATTCTAGAGCAGTGCAAATGGAAAAGTGTAAATGTTTTAGAATACTCCCCCATTTTTTCAGAAATGTTAATATTGGGAGTATTTTTGAATGAACAGTGTGAATTGGGGAATATTCTAGAACAATgtaaatgctaaaaaaacaaTTGGGAATATTCTATACTAGTGTGCATGCTGGAAACATGCTGTTACAGTGCAAACGTTGGAAGTATtcaagaacagtgtgaatggaaGAGGTATTTCTCGTAGAGTGTGAAAGGAAGTTAATGTGGAGAATATTCACAAACAATATAATTAAGGGGAACATTCTAGAATTCCATACTCAAATTCTAAGAACAATAGAGCAGTTTGAATGGGCACAACCATCACACAGGCATGGACAACAACTCAGTGTTTGGGTTTGCTGGTGTTTGTTGTGTAGAGGATTCTGAATCAGTGTGCTTTGAGTTCTAGATTAGATCACTTTGTAGAACAGAACAAGCTCTATCAGTAATAAAATCCACTTTCAGTGTAAAGAGGAGGCTGAGTACAGGTCGAGTCACTTCTTTAGAAACTGTGAGGCAGCAGTAACAGTAAGGTGTCTCTGACAGCAGGCAGTACTCTCCTCAGCTGTCTGCTGTAAATCAGCCATCGTTCGTTATCTTGTCCACGCCCACGGCCGTGCTCTGGACAGTCTCAATCACGGGCTGGACGCTGAAGACCAAAGCAGGGTCTGTGGTTAAAGCCATGCAGGGGAACGCTCGAGCTCAGGCAGGTTCACTTCAGACTTGGTCAGAGAACACTGTGTCTTCCTGATCCAAGAGGAATGTGAGGTGGGCAGGGGTCCAGGCTGAAGGGGTGGAGCCAAACAGTCTCGCCAGTTGGGGAGGATGGGAGGCCTGAGTGGGATGGGTTTTGGAGGAGTTAGGGAGGGTGTAGTGAAGAGGAGATGAAGATGATTGCTGAGAGGAATGCTGGACAGTCGGGGGAGTTTTGGACAGGACAGGAGGCAGggagaaatgaaaaaaagaatagaatagaagtgGAAGGATTTTTTAGGAAATGAAGAAGAGCTGGACATGCTGAAAGATCAAAGAATGACCATCACTTGTCGTGATCTGGCATGAAGCTGCCCtgatactttctttcttttaagtaATATTCGTAGCAGATTATAATTCTAAAGGTTTTAAAGGGTTATATTCTGTTCTGTATGGTATTGAAAAGGGTTCTATGGAACAAACACCAAAACATTTGAGAATTATCAATGTAGAGTAGAACTGTTTCAGCAGCAAGGATGATGCAATCATTTGTTGTGGTTCTATACAGAACCATACACTTCAACAGTAGATCACTGTAGAACCACGTTTTAAGGGTATACTAATGGTATACTGAAATTTTAGGtatgataaaaagagagaaaattgaCCAATTATGACCTTTTGATCAAAAGCATCAAAATGACTAGTTTTGACCTAGGTTATTAAAGctacaatacatattaaaaaatgagGTGCAGGATGTAAGGATGTAAGGATGTAAGGTAACTTCACAGAGCACAGGGAAGTGATGAAGAACAGTGTGAAGAAACGTCCAGAGCAAATATTTTCAATAAGACAAAACATGTCAGCAAACAATGGCCAAAATACAGTGTATGCCATTTGCTTACCAGCCTTATTAGTTTAGATAAGGATTTGTGGGGGGCATCTGATTCACATTAGTGGTGCATGCTCAGAATTACTACTGTTAGTCAGCTCCCACGCAAAGAAAAGAAACCTGCTGACCAAGCAAGATACAGAAAAAGAGGCTTGAGATTCACTGCAGGGTTTCCCCAAACCAGTCTTTAAGAACCCAGCAAAGTCGGCAGAAACTGACAGAAAAACCCTGACAAACAGAACAGGAAACTATGAAGCAGCCACAGCCAAATGAGTGTCAAATGAAGACTGGATTGGTAGAAAGCCCCTCAGCAccaagctgtggagcagtggaactgaaCTCTCTGGAGTGATGGAATTCCAGTAGATTCTTGGAATTACGTATCTTTCTATAACAATGTCCCTTATCTCACTTTtagcttttccaccaaaagaacttaGGTTCTTGAACCAATTCCATTTCCAAGCAGCTTTATTGGAACCGTCAAAATGTCAAATCATACGTCATTAACATAGGGCATTGTACAGTGCCGGTGCTCCTGTACAACCAGACACGTCCACAGATATGGTCACGGTTTGcgctgaagaacctagtattcttcaaTTTTACTTGCGAACAAACGTTTCTTGTTtgggaacctacttttgttggtggaaacacaGCATACCGGTTTAAAATTAGGTTCGCCAAAACGGTGCTGATTCCACGTTGGTGGAAATGCGATATCTCTGATGATACTACCAGCACTGGATTATGGAGCACTGGGATGGACTTTATGCAAAGACTCAACTGATCGCCCAACATAAGTCCCCGACCTCAGTCCCAGATAATACCATCAGCACTGATCTCTAAATCAGTGGAACAGCTTTCTCTGAAattatggagctccatccaatacattTGAGATGATCTGAAGTGCCAAAGCTCAACTGATCACCCAACACTGATTCCACTCCCATTGCATtgggctgtggagcagtgtACCTGAGTTCTCTGTTGTAGTCCCATCCTGACATCATTCCTTGAACAGACAATCAAAATTGGGCTGCTGAGCACCGAAATCGAGTTATCTGGAGAATAGAGCTCAATTCTTTGAGAATATCTGGATTATCAAAGGTTTACTGATCACCCAATATTAGTACCAGACCTCACATCCGGTGGAGACTACCACACtgggctgtggagcagtggaactgtattATTTGGAGTAATGGAACTCAAGGTAAGCTTTGGAAAGCACTGGACGATCACCCAACATTACCTTCTGACTTGCACCTTATGTGGCTTCATGCAACCTCATCCAATACCTCTAGGATGGACTGCAGGCCAAAGCTCAACTGATCACCCAACATTAGTCTCTGTGGAGCTCATTAAATAAATTTGCCCGATCCCTCCAATTCAACCTTCATGGAATTGTCATAAACAGCTCTGCTGTGGTTGCCTTTAGTTGTTTTGTGATTGGTTTACATGGGCCATACTAGTCCCTGAATCATTTTCTAAACTGGCATGATGTTAACACTTTCATGGATGCTTCTGTGTTCCTGTCTGGTGATTTTGTTATGTACCGACATTAGCCTAGTTTAAGAAAGAGCTGAAGGAAAGAGAATTTCACAAAGAGATTGCAAAGAGTCCAAAGCTTGTAAGAAAGCAGAACAAAATCTAAACTAAGCCAATTTACCATCCATGATTCGGTACATCAAGAGAGTTCACCACATCAGCTGATTGCATCAGTTTGGAAGAGCACCAAGAGAGAGCTGTAAAAGTAGCCTTGCCCAGCTGGAAGAGAACCAATCATGAGAGACCACCCCAGCAAAAGACATACAACTGATTGGAGGCAGCATCCCAGCAGGCGTTAGAAATGATAAGTAACTACCTTACCTTATGACAAGGGCGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230510 True 4542 lncRNA 0.40 2 26382172 26387033

Neighbor

gene id symbol gene type direction distance location
LOC103035301 NA coding downstream 350787 26029478 ~ 26031385 (-)
LOC111194933 NA coding downstream 601171 25774326 ~ 25781001 (-)
LOC103035604 NA coding downstream 627581 25731814 ~ 25754591 (-)
LOC103035913 LOC108430488,LOC108266232 coding downstream 661398 25685067 ~ 25720774 (-)
LOC111194961 NA coding downstream 886433 25491361 ~ 25495739 (-)
LOC103038930 NA coding upstream 250543 26637576 ~ 26647990 (-)
LOC103038625 LOC103038625,LOC108430498 coding upstream 266141 26653174 ~ 26663616 (-)
LOC103038316 NA coding upstream 276994 26664027 ~ 26670958 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 coding upstream 676159 27063192 ~ 27070005 (-)
plekhm3 plekhm3,LOC107733641,LOC107551948,LOC107663884 coding upstream 700366 27087399 ~ 27141209 (-)
G170260 NA non-coding downstream 20675 26351426 ~ 26361497 (-)
G170257 NA non-coding downstream 21741 26342187 ~ 26360431 (-)
G170248 ptpn4,LOC107738498,LOC107733639,LOC107700215,LOC107551944 non-coding downstream 51548 26327943 ~ 26330624 (-)
G170245 ptpn4 non-coding downstream 62054 26311776 ~ 26320118 (-)
G170213 NA non-coding downstream 185493 26196324 ~ 26196679 (-)
G170276 NA non-coding upstream 87753 26474786 ~ 26475063 (-)
G170280 NA non-coding upstream 106499 26493532 ~ 26493747 (-)
G170308 NA non-coding upstream 176611 26563644 ~ 26603630 (-)
G170349 NA non-coding upstream 300231 26687264 ~ 26688282 (-)
G170350 NA non-coding upstream 331479 26718512 ~ 26718772 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 129906 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 476556 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 872756 25501940 ~ 25509416 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other downstream 2029264 24307650 ~ 24352908 (-)
G169567 NA other downstream 3486740 22894768 ~ 22895432 (-)
LOC111194963 NA other upstream 1513158 27900191 ~ 27902899 (-)
G170854 NA other upstream 2299017 28686050 ~ 28687679 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 5508799 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 6371474 32758507 ~ 32776018 (-)
G171553 NA other upstream 6787020 33174053 ~ 33176284 (-)

Expression


Co-expression Network