G170257


Basic Information

Item Value
gene id G170257
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 26342187 ~ 26360431 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU230506
ctcacacacacacacacacacacacacacacacacacagctacatgAGAGCAAAGATCGACCCCCATGGAGCCGTGCTGATGCCTCAATGCCTTCTGGACTGTAATCATTTTCAATGTATATTTACcgtattaaaaacaaatatgtatTTGGGTAGAATTATCTATAGCACTCATATTCATCAAATTGTCTACCTCAGTACAAAGGGCAGGTTTTAGTTGATACAATGACATGGAAGAATAAAACTCAATGAATTTCGACATCTAATACAATGAGTTGCCTTCAGAATTATTTCCTAGTATTACTAGCAATAACTTATATTACTGATACTATCTGATATTATAATTTCATCTTcctcaaaacatttaaatcttgCCAAATGTAATAACTGAAAACAAGAGCCTATAGTTTTGAAGGGCAATTTATACACTACCTGTTATAATGAAACATCACTTTGTAATAGGCAAAATATTGAAATTTAAGTAGAAAAGGGCCTTATGTCCATTTTACGGTATTAAAATTTTAGAAAGTATAATTTAGTATGTATATACTAATGTAAAACTACAAGCTTTTGAAGAGTactgtaatgtgtaatgtttaTAGCTTAATGTTTAATTGTCATTACTTTTCATTTTGTTCCAATGTCTAACGGAGAATTCAGTTCTAGCTTAAATGTCACGGTATTCCTCCAAGATGGATCACACTCAAATCTCCACACCTTTTTAATCTGCTGCTAATTATAAACACCACTGGggctcaacacgcttggaggagagcaCTAACTTCTAATTCTGTACATGCTACGACAGCATGGACAGTGTGGAACCCCCACTACTTACAACTGTGGCATCACTGGCAGTCTTACAATAATTTGGCGGCACTATTAAACAGCTGATTTAAGATCAGGATAGATTTAGAGGACTCAATATCAGATCCAGGCCACAGTTAAGAGCCGAAATTGGGTAAAGCTGTATGGTTTGTCTGTATTTATGCTGGTAATGAGTTTAGTGCAGACGTAGCAGATAGTAACTCCTGAATGTGCTGCTGAGACGACAATCAGGCCTCATTTCATTCGTTCAGTTTTACTGATCTGAGAACAGTCAAGTCTCCTGGGCTGTTCTGAGATCAGCAATTAATAGCTATAAAGAAGCTGTGGCGATTAGGCTGAATGTGAATTACCTGCAACTCCAAGAGGCACAAATGGAAAACGGCAATGTACGCccatgtccacacacacacacatacatacacacactttccaGTTCTACTGTTGTACTCAATTAGTTTAAATTAACGCAAAAAGTCTCATAAAAGTTGCTTAATGATGTCTGATAAACATGTAAAACGTTACCCCCGTTCCACAAGTCAGTTTTCAACAAAAGCTGTGATCTGCAAacacagtcagtcagtcagtccggGTTACAgacctttcaaataaaaaacacaaagtgCTCTAGGTTTCCTGGCAACTGCATGATTTTTGATAAAAGcaagaagaataataaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230506 True 1508 lncRNA 0.37 2 26342187 26360431

Neighbor

gene id symbol gene type direction distance location
LOC103035301 NA coding downstream 310802 26029478 ~ 26031385 (-)
LOC111194933 NA coding downstream 561186 25774326 ~ 25781001 (-)
LOC103035604 NA coding downstream 587596 25731814 ~ 25754591 (-)
LOC103035913 LOC108430488,LOC108266232 coding downstream 621413 25685067 ~ 25720774 (-)
LOC111194961 NA coding downstream 846448 25491361 ~ 25495739 (-)
LOC103038930 NA coding upstream 277145 26637576 ~ 26647990 (-)
LOC103038625 LOC103038625,LOC108430498 coding upstream 292743 26653174 ~ 26663616 (-)
LOC103038316 NA coding upstream 303596 26664027 ~ 26670958 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 coding upstream 702761 27063192 ~ 27070005 (-)
plekhm3 plekhm3,LOC107733641,LOC107551948,LOC107663884 coding upstream 726968 27087399 ~ 27141209 (-)
G170248 ptpn4,LOC107738498,LOC107733639,LOC107700215,LOC107551944 non-coding downstream 11563 26327943 ~ 26330624 (-)
G170245 ptpn4 non-coding downstream 22069 26311776 ~ 26320118 (-)
G170213 NA non-coding downstream 145508 26196324 ~ 26196679 (-)
G170210 NA non-coding downstream 203947 26137817 ~ 26138240 (-)
G170209 NA non-coding downstream 205033 26136775 ~ 26137154 (-)
G170261 NA non-coding upstream 21741 26382172 ~ 26387033 (-)
G170276 NA non-coding upstream 114355 26474786 ~ 26475063 (-)
G170280 NA non-coding upstream 133101 26493532 ~ 26493747 (-)
G170308 NA non-coding upstream 203213 26563644 ~ 26603630 (-)
G170349 NA non-coding upstream 326833 26687264 ~ 26688282 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 89921 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 436571 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 832771 25501940 ~ 25509416 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other downstream 1989279 24307650 ~ 24352908 (-)
G169567 NA other downstream 3446755 22894768 ~ 22895432 (-)
LOC111194963 NA other upstream 1539760 27900191 ~ 27902899 (-)
G170854 NA other upstream 2325619 28686050 ~ 28687679 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 5535401 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 6398076 32758507 ~ 32776018 (-)
G171553 NA other upstream 6813622 33174053 ~ 33176284 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G81545 NA non-coding CI01000013 null 5610861 ~ 5611159 (-)
eurasian perch (Perca fluviatilis) G69258 NA non-coding NC_053117.1 CM020914.1 43037547 ~ 43038477 (-)
striped catfish (Pangasianodon hypophthalmus) G78159 NA unknown NC_047599.1 CM018545.1 7043787 ~ 7046809 (-)
tiger barb (Puntius tetrazona) G62684 NA non-coding NC_056706.1 CM032075.1 10137323 ~ 10139265 (+)
mexican tetra (Astyanax mexicanus) G68745 NA non-coding NC_035903.1 CM008306.1 34160875 ~ 34173736 (-)