G170308


Basic Information

Item Value
gene id G170308
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 26563644 ~ 26603630 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU230567
ttagtctgttgccattaacagcttcttttccattggctactgtcacaatctatttgcatactggtttagtctgttgccattaacaacttcttttccattggcttctgtcacaatctatttgcatactgggtgtgtccaacagtttctgacactcaccatcagtgtgtagtgattccccctgggctaccttaggtaaactt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230567 True 200 lncRNA 0.42 2 26563644 26603630

Neighbor

gene id symbol gene type direction distance location
LOC103035301 NA coding downstream 532259 26029478 ~ 26031385 (-)
LOC111194933 NA coding downstream 782643 25774326 ~ 25781001 (-)
LOC103035604 NA coding downstream 809053 25731814 ~ 25754591 (-)
LOC103035913 LOC108430488,LOC108266232 coding downstream 842870 25685067 ~ 25720774 (-)
LOC111194961 NA coding downstream 1067905 25491361 ~ 25495739 (-)
LOC103038930 NA coding upstream 33946 26637576 ~ 26647990 (-)
LOC103038625 LOC103038625,LOC108430498 coding upstream 49544 26653174 ~ 26663616 (-)
LOC103038316 NA coding upstream 60397 26664027 ~ 26670958 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 coding upstream 459562 27063192 ~ 27070005 (-)
plekhm3 plekhm3,LOC107733641,LOC107551948,LOC107663884 coding upstream 483769 27087399 ~ 27141209 (-)
G170280 NA non-coding downstream 69897 26493532 ~ 26493747 (-)
G170276 NA non-coding downstream 88581 26474786 ~ 26475063 (-)
G170261 NA non-coding downstream 176611 26382172 ~ 26387033 (-)
G170260 NA non-coding downstream 202147 26351426 ~ 26361497 (-)
G170257 NA non-coding downstream 203213 26342187 ~ 26360431 (-)
G170349 NA non-coding upstream 83634 26687264 ~ 26688282 (-)
G170350 NA non-coding upstream 114882 26718512 ~ 26718772 (-)
G170353 NA non-coding upstream 207271 26810901 ~ 26811119 (-)
G170485 NA non-coding upstream 363325 26966955 ~ 26972123 (-)
G170499 NA non-coding upstream 428512 27032142 ~ 27034606 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 311378 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 658028 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 1054228 25501940 ~ 25509416 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other downstream 2210736 24307650 ~ 24352908 (-)
G169567 NA other downstream 3668212 22894768 ~ 22895432 (-)
LOC111194963 NA other upstream 1296561 27900191 ~ 27902899 (-)
G170854 NA other upstream 2082420 28686050 ~ 28687679 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 5292202 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 6154877 32758507 ~ 32776018 (-)
G171553 NA other upstream 6570423 33174053 ~ 33176284 (-)

Expression


Co-expression Network