RNA id: TU230494


Basic Information

Item Value
RNA id TU230494
length 562
lncRNA type inter_gene
GC content 0.54
exon number 5
gene id G170248
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 26327943 ~ 26330624 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAACTGGGCCAGTACAGCACCACTGCTGAGACCGTCTTTCAGCTGCTGCATGGATTCCCTCCAGGCGTCCTGGTCCAGCTGGGAGGGGTCCGTGGGGGACTTTGCAGGGATGTACTGGAAATCTGGCTCCATCTCCAACTTTTCCTCCACCACGTCATAGATAGCGTTGGGCCTGACCAGCAGGATGAGCTCCCCTGAGTGGCTTTCACAGCTGGCTTTGATGAACATGACCACCTGGTCGTGAGTGTGCTCAGAAATATCGCGGCCGTTTATCAGGACGACCTGGTCGCCCTCGTTCAGGCGGGGCACACACAAATCAGCCGATGTTCCTGGAGCCACTCGAGACACAATTACAGGCATCTTCTGGTCAGAACCACCCGTTACATTGAATCCAAATCTTCCATTTTCATCCGGCTTCATCTTGATTAGAACAAGATTGTCATGAGGGACCACCCCATTGAGCGTGGCCTTTTCTGTCGCCACAGGGATATCGTACATCTCGTTGATGTGGTTGTCCAGATCCTGTTGGGAGTGGGAGAGAATGAGCTGGCTCAAGTTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230490 lncRNA downstream 7825 26311776 ~ 26320118 (-) True G170245
TU230484 lncRNA downstream 96761 26226488 ~ 26231182 (-) False LOC103029246
TU230452 lncRNA downstream 131264 26196324 ~ 26196679 (-) True G170213
TU230449 lncRNA downstream 189703 26137817 ~ 26138240 (-) True G170210
TU230446 lncRNA downstream 190789 26136775 ~ 26137154 (-) True G170209
TU230506 lncRNA upstream 11563 26342187 ~ 26360431 (-) True G170257
TU230509 lncRNA upstream 20802 26351426 ~ 26361497 (-) True G170260
TU230510 lncRNA upstream 51548 26382172 ~ 26387033 (-) True G170261
TU230532 lncRNA upstream 144162 26474786 ~ 26475063 (-) True G170276
TU230536 lncRNA upstream 162908 26493532 ~ 26493747 (-) True G170280
XM_022680485.1 mRNA downstream 75677 26226457 ~ 26252266 (-) False LOC103029246
XM_022680484.1 mRNA downstream 75677 26226457 ~ 26252266 (-) True LOC103029246
XM_007260596.3 mRNA downstream 296558 26029478 ~ 26031385 (-) True LOC103035301
XM_022680482.1 mRNA downstream 422327 25798510 ~ 25905616 (-) True LOC103030841
XM_022680481.1 mRNA downstream 546942 25774326 ~ 25781001 (-) True LOC111194933
XM_022680488.1 mRNA upstream 306952 26637576 ~ 26647990 (-) True LOC103038930
XM_007260437.3 mRNA upstream 322550 26653174 ~ 26663616 (-) True LOC103038625
XM_007260436.3 mRNA upstream 333403 26664027 ~ 26670958 (-) True LOC103038316
XM_007260429.3 mRNA upstream 732568 27063192 ~ 27070005 (-) True fzd5
XM_007260427.3 mRNA upstream 756775 27087399 ~ 27141209 (-) False plekhm3
TU230416 other downstream 422461 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 818527 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 2003438 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 3432511 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 3969536 22338439 ~ 22358407 (-) False man1a2
TU230949 other upstream 1570170 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 2355426 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 5569724 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 6427894 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 6843429 33174053 ~ 33176284 (-) True G171553

Expression Profile