RNA id: XM_043254689.1


Basic Information

Item Value
RNA id XM_043254689.1
length 2467
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC122356189
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10294206 ~ 10297714 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AatataatcaacatttaaacgttgtgtttgttcattaaaaacataaaatcattaaaatcataaaatcaaagGAATTCGTGTGAATTCTTATCTAAACCCAGTAAACAGTGCAAGGACAATGACTAATTATTTAgcctattcatttatttatttatttatttaaattaaattactctattaaaaataacttttggtCAATTGTCATTTGGTCATTCCGGGagaccaacatttttttttttttttttgctaaaatttGTAATGCAGTGATGGCcatctaaaacatttaatatagcacaaagagaaaaaaaatccaggaTCTAAACAAGTTCTTTGATCAAGCCTAAATCGATTTAACTGTTAAATTTCGGATCCATTCAAAACTGCGCAAACCTGGACAGTTCCATCGACAGACAGCAGTTTAAAGGACCCTAAAATCTGTCCTTTGTGTGCATGCGTCAAACAAACCCGCTGAAAACGTTACAGTTAAATTCACGTTTTAATTGTCTGAAAAGGTATAGTCTCATCTTAACTGTCACCACCAGAGGGAACATGACAGAATGGGACAGTCCGCCGGGTATATAATCACAAGCACACCCATTTTAGACTCCTTTAGTTGTGACGAAGATGAGCTACGGATCAGACAACTACATGTCCTCATCCTATAGAAAGATATTCGGGGAAACCCCTCGTTTCACCGGCTCCACCTCTAGGACGAGCAATGTCTCCTCGAGGAGCTCCATGTCTTCCAGCGGCTTCAGGTCCCACTCTCTCTCCCGCAGCAGCGCCTCTCCGGCGGGCTACTACAAGAGATCGGGCCGGTCATCGTCCTTCTCGCCGGTGCATTTCGACAGCGTGGATTTCTCCCAAACGGCCGTGTTGAACAACGAGTTTAAAATCGTGCGCACCAACGAAAAGGAGCAACTGCAGGGTCTCAACGACCGTTTCGCGATGTTTATCGAGAAGGTGCGCAATCTGGAGCAGCACAATAAAGTGCTGGAGACTGAACTGGTGAGTCTGCGCCAGAGGCAGAACGAGCCGTCCAGGCTGGCTGACCTCTACCAGCAGGAGATCCGGGACCTGCGAGCCCAGGTGGACGAGCTGAACAATGAAAAATCACACATTCTCATCGAGCGAGACAATATCGAGGAGGACTTGCAGAAACTTCGGGGCAAGTTTGAGGATGAGATCCGAGTGCGCGAGGAGGCAGAGCAGACGCTCAGGTCCTACAAGAAAGACGTGGACGATGCCACCATGGTGCGCGTGGACCTGGAGAGAAAGGTCGAGTCCCTCTTAGACGAGATCAACTTTCTGAGGAAAGTGCATGACGAGGAGGTGGCGGAGTTGACCGGCATGATCCAGGCGGCGCAGATATCCGTGGAAGTGGAGTTGTCCAAACCGGATCTGACCTCGGCCCTCAAAGAGATCCGTGGGCAGTACGAAACCCTCGCGTCCAAGAACCTGCAGTCGGCCGAGGAATGGTACAAATCAAAGTTCGCCAGCCTCAACGAGCAGGCCACCAGGACCAACGAGGCCATGAGAGCCACAAGAGAGGAGATCAGCGACTACAGGAGACAACTGCAGTCCAAGACTATTGAGATCGAGACCTTGCGAGGCACAAACGAGTCACTCGAGCGACAGATCCGCGAGATGGAAGATACACACAATGCCGAGGTCGCAGGTTATCAGGAAACAATCGGGCAGCTGGACATTGATCTAAGAAATACCAAGAGTGAAATGGCCCGTCACCTCCGGGAGTATCAGGATCTTCTGAACGTCAAGATGGCATTAGACATTGAAATTGCAGCATACAGAAAGCTACTAGAAGGCGAAGAAACCCACTTCAGTTCTGGGGTGACATTCTCCAGTGCCCCCAGCATCACTTACGGGTATCAGAGCCGCTCCGCTTTCACCTCAACCCGCAATcccaaaaaagagaaagaagaagagggACACGGCAAATCCAAGGCAGGAGACAAGCGGGAGGAAAACACGGCAGAAACCGCTGTGATTAAGAAAGCAGAGAAGAGCGATAATGTTGATGTTAACTCAAATTAGAAAGTTACGGTTATTAAACCAACGCTTCTCTAGATAAGCGGTCTTTGGGGCGTTTGACAGTAATCACTATTAGATCAAATCTGCCAGTTGTTGTTTATAGTCATCGGTGACGTGTTTAAGATATTGTAATTGTGATATCTTGTTTCAAATACTATAGCTGCAATATGCTGGCTTAATATTTCAGAACTTAGGCCTCAAATATTTCCTGTGTTTCTAAATTGTATTTCAGTCCTGTTCATGGAGTATAAATATGAACTTATTATATTAGCCAGCATTAGCACTGATTCAGTGATTATggatatattcatatttaggAAAGGAAAGAACTCTGGCATATTACGAATAAGGGACCAAACTGCTGAATTAACTGTAACACATGTATGCCTTAACTATAATAAAGTCAATAACTGAA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07608 NF66, INA; internexin neuronal intermediate filament protein, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136969 lncRNA upstream 18028 10275584 ~ 10276178 (+) True G92552
TU136950 lncRNA upstream 44481 10235916 ~ 10249725 (+) True LOC122356813
TU136954 lncRNA upstream 44481 10248688 ~ 10249725 (+) False LOC122356813
TU136909 lncRNA upstream 128550 10164559 ~ 10165656 (+) True G92524
TU136894 lncRNA upstream 223423 10068488 ~ 10070783 (+) True G92513
TU136995 lncRNA downstream 11523 10309237 ~ 10309776 (+) True G92563
TU137060 lncRNA downstream 118731 10416445 ~ 10416695 (+) False ly6pge
TU137184 lncRNA downstream 344842 10642556 ~ 10645237 (+) True G92671
TU137194 lncRNA downstream 359794 10657508 ~ 10702103 (+) True G92675
XR_006252420.1 lncRNA downstream 455519 10753233 ~ 10763691 (+) True LOC122357062
XM_043255884.1 mRNA upstream 44481 10205113 ~ 10249725 (+) False LOC122356813
XM_043255819.1 mRNA upstream 227034 10051087 ~ 10067172 (+) True fancl
XM_043255010.1 mRNA upstream 626368 9615027 ~ 9667838 (+) True bcl11aa
XM_043256233.1 mRNA upstream 725679 9567617 ~ 9568527 (+) True neurog3
XM_043254617.1 mRNA upstream 741711 9549733 ~ 9552495 (+) True pcbd1
XM_043255573.1 mRNA downstream 15700 10313414 ~ 10333604 (+) False ldb1a
XM_043255583.1 mRNA downstream 15700 10313414 ~ 10333604 (+) False ldb1a
XM_043255580.1 mRNA downstream 15700 10313414 ~ 10333604 (+) False ldb1a
XM_043255585.1 mRNA downstream 15700 10313414 ~ 10333604 (+) False ldb1a
XM_043255579.1 mRNA downstream 15700 10313414 ~ 10333604 (+) False ldb1a
TU136946 other upstream 44481 10235916 ~ 10249725 (+) False LOC122356813
TU136388 other upstream 1130092 9161561 ~ 9164114 (+) True zgc:153981
TU136262 other upstream 1554117 8739073 ~ 8740089 (+) False sf3b5
XR_006252358.1 other upstream 1611154 8666268 ~ 8683052 (+) False pcnx2
TU135961 other upstream 1983382 8306486 ~ 8310824 (+) True G91833
XR_006252428.1 other downstream 31430 10329144 ~ 10329279 (+) True LOC122357143
XR_006252423.1 other downstream 121108 10418822 ~ 10419594 (+) False ly6pge
TU137252 other downstream 667159 10964873 ~ 10968914 (+) True eif4ebp2
TU137332 other downstream 915812 11213526 ~ 11215087 (+) False G92772
TU137330 other downstream 917778 11215492 ~ 11218175 (+) True G92772

Expression Profile