RNA id: XM_043255010.1


Basic Information

Item Value
RNA id XM_043255010.1
length 6678
RNA type mRNA
GC content 0.45
exon number 3
gene id bcl11aa
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9615027 ~ 9667838 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgttatatttttacaattacactCTTGTAGTATTTAAGTCCCACCTACATCGCGAGCGAGTGTCCTATGCCGCTCTCTATGTGATGTCCCTTAAGTTTCTGTCTGTTCTGGAGGAATGTGGCAGCGCACGCGGCGGTTGAACCCACATGCCCCGGCTCGGAACCTGTCTGTCCTGTTCGCGCAACCCGATCGTGTGCCTCGCCGAGAAGCAGCTTGCGCGCTGCCTCTGACTGACTGTTTGACCAGGAGTTGAGTGACTGTGTTTGAAGCACCATCGGTGTCCACTACGAAACCTTATATGCGAGGTTCCTCTCCCCCTCTCTTTGTATATATAGCATGTCCGGCCCCCTTGAATCTCCTGTCCATTGGCTTTTCGTGCTCTGTTTTCCTGCGTCCACCCCCAgcgcgagcgcgcgcgcgcacacacacacacgcacacactcactcactcgccGCAGCGCACATTGCTTTCATTAAACAtatctccccctctctctctctatctgtgtgtgcgtgtctctcgctctctctctctctcgcctctTGTCCGGCCCCCTGATCTTTCTGTCCATTGGCTTCTTCGGGTCTATTTTTCATGTCCAGCCCCTAATGAGTGTCCATTGGTTTTGTTATTTCCACTCCCTCCTCCCACTCCACGGCTTTGCCCTGCCCATGTTCTGTATGTCTGTGTCCATCCATCTCCTGACGTTCAAGTTCGCAGGGACGTCACGTCCGCACTTGAACTTGCAGCTCAGGGGggcttttgccattttttcatctctctctctctcttttcaaaaAAGCCATGACGGCTATCCCACAATCCATCTTCCCTGCGCCATCTTTgtattatttctaatttattttggatgtcaAAGGCATTGATGAAGATATTTTCTCTGGAGTCTCCCTTCTAACCCGGCTCTCCCGATGTGAACCGAGCTGAAAGCCACCACCAACCACCATGTCTCGCCGCAAGCAAGGCAAACCCCAGCACTTAAGCAAACGGGATTTTTCGCCCGAGCCCCTGTCAGCCGTGGTCTCGGAGGAGAGGCAGGAACAGCGCGGGCTGCTACAGGTAGCTCCAGAGGGAGACCAGGACCTGCTCACCTGTGGCCAGTGTCAGATGAACTTCCCTTTGGGAGACATCCTTATTTTCATTGAGCACAAAAGGAAGCAGTGCAATGGCACTTTGTGCATGGACAAAGCAGTGGATAAGCCCCCCTCGCCCTCGCATGGTGAGCTGAGGAGAGCCTCCAACCCCGTGGAGGTGGGCGTCCAGGTCACGCCGGAGGACGATGACTGCTTATCGACGTCTTCTCGAGGAATCTGTCCCAAACAGGAAAACATTACAGGTAAAGATGAGCCCAGCAGCTACACTTGCACAACCTGTAAGCAACCGTTCAGCAGTGCCTGGTTTCTGCTGCAACATGCCCAGAACACTCATGGCTTCCGCATCTACCTTGAGAGTGAGCGCGGAAGTCCGCTCACGCCGCGTGTGGGAGCTCCTTCGGGAATGGGTGCAGATTGCTCCTCTCAGCCCCCCTTGCATGGCATCCATCTCCCAGAGGGAAGCCCATTCAACTTGCTGCGAATACCCAACTCTGGACGAGATGGACCCCCTCTCCGAGAGGGTCGGTTTCCTCCTACGCCACCTCTCTTTAGTCCTCCACCCCGCCATCACTTGGACCCTCATCGCATGGAGCACCTGAGCCCGGAGGAGCTGGCTTTAGCCACCCACCACCCGAGTGCCTTCGACAGGGTGCTGCGCCTCAACCCCATACCCATGGATCCCCCAGCTATGGACTTCTCTCGTAGGTTGAGGGAGCTGGCTGGTAACACCTCAGGGTCAACTCCTCCTCTCTCACCCAACAGGCCCAGCCCTATGCAACGGCTACTACAACCATTCCAGTCAGGAACCAAGCCACCCTTTCTTTCCACCCCTCCCCTACCTTCCATGCAGTCGCCCTCTGGCTCCCAGTCCACCCCGACCCCTCTTACGCAACAGTCCAACACGCCAATGAAGAGCAAGTCTTGTGAGTTCTGTGGGAAGACCTTCAAGTTCCAGAGTAATTTAATCGTGCATCGACGCAGTCACACGGGTGAGAAACCTTACAAGTGCCACTTGTGCGACCATGCCTGCACACAGGCCAGCAAGCTGAAGCGGCACATGAAGACACACATGAACAAGTCGTCGCCCATGACGGTCAAGTCTGACGATGGCTTGTCCACAGCCAGCTCCCCTGAGCCGGGAACCAGTGACTTGGTGGGTAGCGCCAGTAATGCCCTCAAGTCTGTGGTAGCCAAATTCAAAAGCGAAAACGACCGCCTGATTCCAGAGAAtggagaggaagaagaggaagaggaagaggaggaggaggaggaagaagaagaagaagaggaagaggaggaaggagaggaggaggagctggagagGGAGGGAGGTAGAAACAACTACCACTTCAGTCTCAACCTCGAGGCTGCACGGCATCACGAGAACAATGGTGGACGTCTGGGTGCGGGCGAGGATGGCATCCCGCGCTCGCTGCCTGAGGTAATGCAGGGCATGGGCTTGGCTGCCAGCATGCAGCACTACAGTGAGGCGTTTCATCAACACAAGCGAGGAGCCCTAAACTCTGACAATGATGCACATAGGGACATGTGTGATGAGGACTCGGCGCTGGAATCAGACAGAGTGGACGAGGGCTGTGGCTCAGCTATCAATGGTCGAGGCTCGTCCCCTAGTGAGTCTGCCTCTGTTGGTTTGTCGAAGAAGCTACTACTTGGCAGTCCCAGCTCACTTAGTCCTTTCTCCAAACGAATCAAGCTGGAGAAGGACTTTGACCTCTCCACCCCTACAATCCCCAACACTGAGAATGTCTATTCCCAGTGGTTGGCTGGCTATGCTGCTTCTCGGCAGCTGAAGGACCCCTTTCTGAACTTCGGGGATTCCAGACAATCGCCTTTCGCCTCGTCTTCAGAGCACTCCTCAGAGAACGGAAGCCTGCGCTTCTCTACGCCACCGGGGGACATGGATGGTGGCGTCTCGGGCCGCAGCGGGACTGGCAGTGGCGGCAGCACGCCACATCTCGGGGGTCCTGGTCGGCCCAGCTCGAAAGATGGCCGACGCAGTGACACCTGCGAGTTCTGCGGcaaagtatttaaaaactgcaGCAATCTGACAGTGCACCGGCGCAGCCACACGGGTGAGAGGCCTTATAAGTGTGAGCTCTGCAATTATGCTTGTGCTCAGAGCAGCAAGCTAACACGGCACATGAAAACGCACGGGCAAGTGGGCAAGGACGTTTACAAATGTGAAATCTGTCAGATGCCTTTTAGTGTGTACAGCACCCTTGAGAAACACATGAAAAAATGGCACAGTGACCGCGCATTGAACAACGAAATTAAAACTGAGTAGCGGTGGAGTGTGGTGGCTCACTTGCCTGTTAACAGCGAATAACACCTTACCCCACTCCCACCCTCATCCTTGTAGATTTCCCTGTTTCGCTAGTCCAGTGGCGGCTAAGACAACGTGCTTGGCACCACCAGCACACCCTTTTCATTTACCGTTGAATGCATGATCTGTATCGGGGCAATACTATTGCATTGACGCAAACTTGGAGCCTTTCTCTTGTGCAATAATTTACATGTTgtgtactttttcttttttctttcccattTTGGAAAATTTGACAGCATGCATGATATATTTGGgctaattttgaaaataaattgtcCCTGGTTGGTTAGTTGTTTAGTAAATGTGTTGCTGTTTTATcgtcattattttacaaaaggtttttttctttatttttcttttttattttgagatcaaagaaaaagaaaagaaaaaaacaaccatgCTGCATACATTCTGTAATACATATCATGTACAGTTTTGTGTTGTAACATGGAGGACTACAGGCTATCACTTAACCCTCTTTGGATGGGCTGGAAATCGCACTTAAACTAATCTTTCAAAAAGATGTTCTGTCCACATAGGGTTAAAATACTAATTGGCCCCTATtacggaataaaaaaataatgacagccTTTGGATTTCTTAAAAAGGAAAcagcattaagatttgaatttgTACTATCATTtggtaaaacaaacaaaaagagtgCCTTGGATATCTTGAAATTGCATTGGTTAATCTCATCTGCTGTAATTCTGGAGTCTCAGCTAGATACTACATAAGGATCAATGGGATCCTCAAAAGGTTCTTGCATCAAGTACCTTACCGCTATAGTCAACTGTGACTTTAGAGAGAAATAGTAATAATCAAAAATCTAAGGAAATTTGTAGTTAATCACCATTAGGTACCTATGTAAAGCGTATCCTTCCATTGTGGTTTATGTCCTGAGCATGGCACATGCAGTATATCGTGTGGGATTCAGCCTTGTTTACTTCTTCTATCTGAAGGTACTGTACTTGGCGGTACAAGTTTTCAGTCCACAATCATTTGACTTTCTGTGTTTGTTCGAGTCTTCTCTTCAGTAGCACAACATTTTGATGTTTCTTTGATGACCATTGTTAGCGTGAACGTCCATTGCGAAGGAACACCTGAGGGCATTTGGAGCAAACTAATGTAATGTACACTTGAGAATTGGTTATTAAGAAAGCATTGAAATATTTGCAGCTGTCAGTGATGATTAACTATGAATTGCCTACAGGTCTGAGTCAAAatcttatttctttattattgcCTATGTCTGAGCTCCCTAAAAGACTAAATGAACCTGAAAGACCGACCGAGCGAGAGCGAGACTCAGAGAGAGGGAAAACCTTACACGTcacttttgttcttttgttttgtttgagtttCACACATGGTGTGGTATAAGTTGACATTCAAggagactcttttccattgttGCATTATGACATCAATGActccaaaacaacattttttggTGTTTATGCAGCACCTGCCACTCTGCCCTTCTTTTTATATTAGACATGCTAATTGGAGGTATAGTAgttgaatataaattaaaattgcttGCTTGTTGGACAACGAAGTGCACTGTTAAAGTTTCCCAGTTTACAGGTATTTCACGAGAGGGAAAACTTCCTAATGAATCGAACATGGTGTcattgtttaatgtaaaaaagcCAACTCCTCCTCTCACCTCATGAAGATAAAGCCCAACTccaatataatattattgtgtcaaagcacacAGTGCTTGACAAAGTACGGACAATTGAAACTTGCTGCTTTCACTGCAAGaactttttttgtacaaatctttttttaagtatgaaaataaaatgacttttttaaaaagtaacatttcattATCTTAGGGGAAACTGTATTTAAGTTTGTtgtttctcttttcctctttgtcTTGGTGGTGTTCAAGACTTgatcacaatatatataaaatgggaaaaatctgtgattttttttcctgctttttctttcttttttcatcttgGCTCTTCACAGCTCTTCAGGTCAAACTTGCATTGGGGAAAGGTttaagattatatataaaatatataatagagaAACTTAAATATAGGAAAATGCACATCATGTCAGTTCCTAtgctaaaacacatttatggtCTACTTTCTTCTGTATTTCTAGAATggtatttgaattaaatgttcaCCTAGTGTAGgtactacagtatttatattgaGGCTTGTATTTTTAACTGTTGCTTGTTCTCTCAAAAGGTATTATTGTACCTTTTTTGgtagtggaaaaaaacaacaagctgCCAcggtatatttttttaatttggcagGATAATATAGTGCgaattatttgtatgtttaaaaaaagaaaatggaaaaaaaaaatcaaattaaaaaattaaagtatGTGGCATTGTACAAAGGAGGCCATTCAATGGTTTCCCCCGAGGAGTCTTTTGAGAATGTCCACACTAGCTAAAACAGGTGGTTGTACATatcttttttctgttcttctttttaaaaactccTCTGCTGCCATTCTGTATGCAGTACAGCAAGCTAATGTTGGGTTGTTCTGTAGTGTGCTTCTGTCTTTTCACCTGTCTCACCTGAATACATTCCAGCATcttgaaaaaaaagctaacttCATATGCAGTAAAATAccagtaaataaacaaacaaaaatcattcaaataaatgaattcaaataatcaatgttttgcaggtgttttttttttcattgccaAATATTAAATGGTGCTTTATATTTAGATTGGGATGACTTTCATATgcaaagcatatttaaaaatgaaatggaacTAAAGGAGCAGCCCACTTAAGTTCATACTCTTTTGTAAATGGCAATGCGGAATATTTTGTTATCAGCCTTTTCTATTCCTGTTATGAGAGCTGTTTGTTGTAACTTGAACTTGAACTTTATCTTTTTCAATGGGAGTCACtatttattattgcttaaaTACTCTGTTCAAAACGGAGACATAGAATGGatccttttttgtttgtttgttttcatttaatttttttctttttttttttaaaaagaaaagaatgaccAAAGGTCATTGACAGacttgcttttttgttgtttttgtttctggtCTATGTTGAGTTTTATTGGAGAAACCACTGTCTGTGTTTTCTGGCAGTTGTCTACATTATCCTGTTCACCAACCAATTTTGTCCCTTTAttgaaaacaattaataaaaaaattaagtata

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K22045 BCL11A; B-cell lymphoma/leukemia 11A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136704 lncRNA upstream 20750 9592419 ~ 9594277 (+) True G92361
XR_006252391.1 lncRNA upstream 31356 9582555 ~ 9583671 (+) False LOC122356835
XR_006252390.1 lncRNA upstream 31356 9582631 ~ 9583671 (+) False LOC122356835
TU136663 lncRNA upstream 31957 9570989 ~ 9583070 (+) True LOC122356835
TU136670 lncRNA upstream 135275 9479421 ~ 9479752 (+) True G92334
TU136805 lncRNA downstream 56558 9724396 ~ 9727967 (+) True G92432
TU136807 lncRNA downstream 62887 9730725 ~ 9731002 (+) True G92434
XR_006252389.1 lncRNA downstream 376943 10044781 ~ 10049442 (+) True LOC122356803
TU136894 lncRNA downstream 400650 10068488 ~ 10070783 (+) True G92513
TU136909 lncRNA downstream 496721 10164559 ~ 10165656 (+) True G92524
XM_043256233.1 mRNA upstream 46500 9567617 ~ 9568527 (+) True neurog3
XM_043254617.1 mRNA upstream 62532 9549733 ~ 9552495 (+) True pcbd1
XM_043255605.1 mRNA upstream 123621 9482211 ~ 9491406 (+) True LOC122356643
XM_043255352.1 mRNA upstream 141493 9457559 ~ 9473534 (+) False inpp5f
XM_043255819.1 mRNA downstream 383249 10051087 ~ 10067172 (+) True fancl
XM_043255884.1 mRNA downstream 537275 10205113 ~ 10249725 (+) False LOC122356813
XM_043254689.1 mRNA downstream 626368 10294206 ~ 10297714 (+) True LOC122356189
XM_043255573.1 mRNA downstream 645576 10313414 ~ 10333604 (+) False ldb1a
XM_043255583.1 mRNA downstream 645576 10313414 ~ 10333604 (+) False ldb1a
TU136388 other upstream 450913 9161561 ~ 9164114 (+) True zgc:153981
TU136262 other upstream 874938 8739073 ~ 8740089 (+) False sf3b5
XR_006252358.1 other upstream 931975 8666268 ~ 8683052 (+) False pcnx2
TU135961 other upstream 1304203 8306486 ~ 8310824 (+) True G91833
XR_006252298.1 other upstream 1733544 7858698 ~ 7881483 (+) False zswim8
TU136946 other downstream 568078 10235916 ~ 10249725 (+) False LOC122356813
XR_006252428.1 other downstream 661306 10329144 ~ 10329279 (+) True LOC122357143
XR_006252423.1 other downstream 750984 10418822 ~ 10419594 (+) False ly6pge
TU137252 other downstream 1297035 10964873 ~ 10968914 (+) True eif4ebp2
TU137332 other downstream 1545688 11213526 ~ 11215087 (+) False G92772

Expression Profile