RNA id: TU136805


Basic Information

Item Value
RNA id TU136805
length 275
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G92432
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9724396 ~ 9727967 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGTGGACACAGAAGTGACAGTGGGTGGTTTCGAGAGTGGCCAGCGTGGATAATAGCAGCCGGGCGATAGAGACGCACAACAAAAAGGAGAGCCAGAACAAAGGCCGACAATTACAGTCAGAAAGAACTCATCGCTGTGGGGCAAGGTGGACAGCACAGAGCCACGCTCATCTTACACggctctcacacagacacacaggctGGCAAAAGGCATCCAGCCCATCAGGAGCCTCTGAGAGGAAACAGGATGGGGAATTCCAAACAAAGAGACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136704 lncRNA upstream 130119 9592419 ~ 9594277 (+) True G92361
XR_006252391.1 lncRNA upstream 140725 9582555 ~ 9583671 (+) False LOC122356835
XR_006252390.1 lncRNA upstream 140725 9582631 ~ 9583671 (+) False LOC122356835
TU136663 lncRNA upstream 141326 9570989 ~ 9583070 (+) True LOC122356835
TU136670 lncRNA upstream 244644 9479421 ~ 9479752 (+) True G92334
TU136807 lncRNA downstream 2758 9730725 ~ 9731002 (+) True G92434
XR_006252389.1 lncRNA downstream 316814 10044781 ~ 10049442 (+) True LOC122356803
TU136894 lncRNA downstream 340521 10068488 ~ 10070783 (+) True G92513
TU136909 lncRNA downstream 436592 10164559 ~ 10165656 (+) True G92524
TU136950 lncRNA downstream 507949 10235916 ~ 10249725 (+) True LOC122356813
XM_043255010.1 mRNA upstream 56558 9615027 ~ 9667838 (+) True bcl11aa
XM_043256233.1 mRNA upstream 155869 9567617 ~ 9568527 (+) True neurog3
XM_043254617.1 mRNA upstream 171901 9549733 ~ 9552495 (+) True pcbd1
XM_043255605.1 mRNA upstream 232990 9482211 ~ 9491406 (+) True LOC122356643
XM_043255351.1 mRNA upstream 250862 9457560 ~ 9473534 (+) False inpp5f
XM_043255819.1 mRNA downstream 323120 10051087 ~ 10067172 (+) True fancl
XM_043255884.1 mRNA downstream 477146 10205113 ~ 10249725 (+) False LOC122356813
XM_043254689.1 mRNA downstream 566239 10294206 ~ 10297714 (+) True LOC122356189
XM_043255573.1 mRNA downstream 585447 10313414 ~ 10333604 (+) False ldb1a
XM_043255583.1 mRNA downstream 585447 10313414 ~ 10333604 (+) False ldb1a
TU136388 other upstream 560282 9161561 ~ 9164114 (+) True zgc:153981
TU136262 other upstream 984307 8739073 ~ 8740089 (+) False sf3b5
XR_006252358.1 other upstream 1041344 8666268 ~ 8683052 (+) False pcnx2
TU135961 other upstream 1413572 8306486 ~ 8310824 (+) True G91833
XR_006252298.1 other upstream 1842913 7858698 ~ 7881483 (+) False zswim8
TU136946 other downstream 507949 10235916 ~ 10249725 (+) False LOC122356813
XR_006252428.1 other downstream 601177 10329144 ~ 10329279 (+) True LOC122357143
XR_006252423.1 other downstream 690855 10418822 ~ 10419594 (+) False ly6pge
TU137252 other downstream 1236906 10964873 ~ 10968914 (+) True eif4ebp2
TU137332 other downstream 1485559 11213526 ~ 11215087 (+) False G92772

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00013608 False 1127 lncRNA 0.41 3 NC_007124.7 26056461 ~ 26065264 (+)