RNA id: XM_043255605.1


Basic Information

Item Value
RNA id XM_043255605.1
length 3370
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC122356643
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9482211 ~ 9491406 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaagagctcaGCCTTTTCCGACTGGAGGACAAGCTACGTGtaatatttgattgaaaatggCTGATAGGAAAGCCAATAACATCCCCAGCAGCAGCGCAAATCTGCTGTTTTCAGCGGCTCCGGAGTTCAACTTCAGCCTGCCGTTCATACCTGTCAGTCAGGCCACCGGCCCCGCGGTTTTATCGGGAGATGATGCCAGTGAAGTTGGAGAAGAAGACAGTTTTCTTGGACAGACGTCATCAGCAGCTCCTCAAGCCTCCACGTTCAATTATTTTTCCAACACAACTAACAGCAGTGACCCGTTTGCATCTATAGGGCAGCAGCCTTGCCCGCCTCCAGCCGCCACCGTCATTCCATCAACAACGGGCCCATCGCCTGCATCCACTGCAGCGAGCCTGCCTCTAAACCCACCAATATCTCACATGAACCCCATTCAGCAGTACGGCAGTGTTACTAATCAAACCCCAATGAGTACATACACTCATCCACCTAATGCACcgactcctcctcctcctaccCAGAGCTCCCAGCAGTCCTATAACCCATACCGTCACACAGCTGCCAGTAGCAAAGCTAACCCATACCTCATGGCTCCTGAACTACAGCAGCAGCCCCCCAACCAAACACCCCAGCATCTAAACCCCTATACTCAGGCCACACCTGCTCCCTCGTTCCAGACTCCACCCACAGCGTTCTCCAAGcctccCCCAACACAGATTCCACCACCCCCTACAACAGCCAGCATGACCGGACCATTAGTCCCTGCCAACTCAATGGTGCCATATGCATATAATGTTTATGAACCTGTTCAACCTCACTGGTTCTACTGCAAACAAGTGGAGTCAAAGATGGTCTGGCTTCCCTTTAGTATTCTGGATTCCATTCACTTGGAAGAAACATTTAACTCTGTTCAGCCTGATCCAGAGAATGTGATAGTGTGCACGGACGGAGGGCGCTATGACGTGCAGCTGTATGACCGCACACGGACTGCCGTGTACTGGGAGGAAGAGCCCACTGAGGTCCGACGCTGTACCTGGTTCTACAAAGGAGACGCAGACAGCCGCTTCATCCCTTACTCAGAAGACTTCAGCGAGAAGTTGGAGGCAGAATACAAGAAAGCTGTTACCACTAATCAGTGGCACCGCCGACTGGAATTCCCTTCTGGTGAGACCATCGTAATGCACAATCCAAAGGTGATTGTGCAGTTTCAGCCATCTGCCATGCCTGATGAATGGGGCACGACACAGGACGGTCAGACCCGGCCTCGGGTTGTCAAGAGGGGTGTGGACGATGATCAGGACGAAGTTCCTGATGGTGAGATGCCTCAGGTGGATCATCTGGTGTTTATGGTGCATGGCATAGGCCCCGTCTGTGACCTGAGGTTTAGGAGCATGGTGGAGTGTGtgGATGACTTCCGCAGCGTGTCCTTGAAGTTGTTGCAGAGCCATTTCAAGAAGGCCCGTGATGATCATCTGATTAGTCGTGTGGAGTTTCTGCCTgtgcactggcacacagctcTGCATGGTGATGCTACAGGGGTTGACAGGAGGATAAAGAAGATTACTCTGCCCAGCACAGGTCGATTGCGTCACTTCACTAATGAAACCCTCTTAGATGTTCTCTTCTACAACAGCCCAACCTACTGCCAAACCATTATGGACACCGTGGCTTTTGAGATCAACCGCTTACATGCACTATTCATGCAAAGAAACCCAGACTTCAAAGGCAGGGTATCCGTTGCTGGACACAGCTTGGGCTCTTTGATACTTTTTGATCTGCTGTCCAATCAGAAGACAGGCTCACCTTCATCCAGTCCAGTGACCAATGGGAATGCTTTATCTAATGTGAAACAGGTAAGTCCTGTCATCCAGGCCAATGAAGTGCCTACTGTAGCAGCTGCTGAGGAAGAATctaaagaggaagaagaggagatTGGGAACCTGTCATCAGTTCTGGAGATGTTGGGGTTGTCTGAATATCTAAGCACTTTTGAAACCGAAAAGATTGACGTAGAGTCTCTGCTGATGTGCACAATAGAAGATCTGAAGGAAATGGGTATTCCTCTGGGGCCACGCAAAAAACTTGCCAATTTTGTCAAAGAGAAGTCTGCAAAACAGgCGGCCCGAAAGGCTGTGAAAGAGAAGACTGTAGAAAAAGAGGATCCGAAAGAGACCCAAGTTTCCGTTAGGACAGAGCCCACACCAGATTCTGCCGTTAGCAAACTGCCAGTGGGAAGGACCATGTCCTCAATTCATGTGgattacaattattttgaaattggcACAGGACAGGTGTCAGTGGTATATCATGCTCTTGTCTTTGAGCCGGTGAATTTCTTTGCTCTCGGTTCTCCCATCGGGATGTTTTTGACAGTACGTGGGGTGGAGAAAATCGAAGAGTCCTACCAGCTTCCCACCTGCAAAGGGTTCTTCAATATCTACCATCCACTGGATCCAGTTGCATACAGAATTGAACCCATGATCTTACCAGACATTGAGCTGGATCCAGTTTTGATCCCTCATCATAAAGGGAGAAAGAGGCTTCATCTCGAATTAAAAGAGAGTTTATCCAGGATGGGCTCTGACCTAAAGCAAGGTTTCATCAGCTCTCTGAAGACCGCTTGGCAGACTCTGAATGAGTTTGCCCGCGCTCACACCTCGTCCGCTCAACTGCATGAACAGCTCGCCATGGTCGCCAGTCAAATCAAAGCGGAAGAGGAAAAGCAGCAAGGGGAAGAGGAGAATAAGATGATCGAGAGTCCTGAACCCCAGAAAGAAGAGGAGACACAAGTAAAAGTGGGCATGCTGAATGGAGGGAATCGCATCGACTACGTCCTGCAAGAGAAACCCATCGAGAGCTTCAATGAATACCTGTTTGCACTCCAAAGTCATCTGTGTTACTGGGAATCTGAAGATACGGCTCTGCTTCTCCTCAAGGAAATTTACAAGACCATGAACATACACCCAGATCATTCGGTGCATTGATGTAACGGCTCATTGAAACTCCTCAGCTATCACaaattacattactttaaagataaaagaatattttaaagttttcaaTTCTTCACCTGGgactgtctttattttttattcttgtagTCTATATTAAAAGGAATACACTTGTATTATTTCATGTGtcttaaattaagaaattaaagtCAAATAGTGGATTTCAATACCACCACAACggtttaaaatgccatttttatagCTTAAATTATAGTTGCGAATGTTTGAATGCAGTTGCAAATGGAATCAAATGGTATTAACAACTTTTATCTATAGTTAGTGAAGAAATAACTATGCCGTGTAAAAACTACAACCAACAAATCATAATAAACTGAACTATTGTGAACTATTTTGAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136670 lncRNA upstream 2459 9479421 ~ 9479752 (+) True G92334
TU136646 lncRNA upstream 31522 9450446 ~ 9450689 (+) True G92313
TU136465 lncRNA upstream 47615 9430178 ~ 9434596 (+) False atoh7
TU136467 lncRNA upstream 47615 9430178 ~ 9434596 (+) False atoh7
TU136420 lncRNA upstream 206512 9264064 ~ 9275699 (+) True G92147
TU136663 lncRNA downstream 79583 9570989 ~ 9583070 (+) True LOC122356835
XR_006252391.1 lncRNA downstream 91149 9582555 ~ 9583671 (+) False LOC122356835
XR_006252390.1 lncRNA downstream 91225 9582631 ~ 9583671 (+) False LOC122356835
TU136704 lncRNA downstream 101013 9592419 ~ 9594277 (+) True G92361
TU136805 lncRNA downstream 232990 9724396 ~ 9727967 (+) True G92432
XM_043255348.1 mRNA upstream 8677 9457557 ~ 9473534 (+) True inpp5f
XM_043255349.1 mRNA upstream 8677 9457557 ~ 9473534 (+) False inpp5f
XM_043255352.1 mRNA upstream 8677 9457559 ~ 9473534 (+) False inpp5f
XM_043255351.1 mRNA upstream 8677 9457560 ~ 9473534 (+) False inpp5f
XM_043255353.1 mRNA upstream 8677 9458666 ~ 9473534 (+) False inpp5f
XM_043254617.1 mRNA downstream 58327 9549733 ~ 9552495 (+) True pcbd1
XM_043256233.1 mRNA downstream 76211 9567617 ~ 9568527 (+) True neurog3
XM_043255010.1 mRNA downstream 123621 9615027 ~ 9667838 (+) True bcl11aa
XM_043255819.1 mRNA downstream 559681 10051087 ~ 10067172 (+) True fancl
XM_043255884.1 mRNA downstream 713707 10205113 ~ 10249725 (+) False LOC122356813
TU136388 other upstream 318097 9161561 ~ 9164114 (+) True zgc:153981
TU136262 other upstream 742122 8739073 ~ 8740089 (+) False sf3b5
XR_006252358.1 other upstream 799159 8666268 ~ 8683052 (+) False pcnx2
TU135961 other upstream 1171387 8306486 ~ 8310824 (+) True G91833
XR_006252298.1 other upstream 1600728 7858698 ~ 7881483 (+) False zswim8
TU136946 other downstream 744510 10235916 ~ 10249725 (+) False LOC122356813
XR_006252428.1 other downstream 837738 10329144 ~ 10329279 (+) True LOC122357143
XR_006252423.1 other downstream 927416 10418822 ~ 10419594 (+) False ly6pge
TU137252 other downstream 1473467 10964873 ~ 10968914 (+) True eif4ebp2
TU137332 other downstream 1722120 11213526 ~ 11215087 (+) False G92772

Expression Profile