RNA id: XM_043254971.1


Basic Information

Item Value
RNA id XM_043254971.1
length 2012
RNA type mRNA
GC content 0.40
exon number 4
gene id ccsapb
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8905886 ~ 8909793 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCCTTCACCACAGGGCGGAGCTACAATCGTGTTTTACAAAGCAAGCCTGACGTCTACAGACAAGCGCCATCTGTTTACCTTCTCATTCCTGCTTAAATTACTTCGTCGGACGATAGTGAAATATGGTGACGAAGCGGATTAGGTCCGAATACATGAAGAAGTTTAAGGATCCGAAATGGGACACTTATGCAAAATGTTACGAGGACTTGCTGAAGTACAGACTGTCAAGACGTCTGTTGGAGCAAGCGCACAACCCCTGGTTCTGGGGAGAATGGGGGAGCGAGACAGGCTCCAGCGGTAAAACTACTCCTCTAAGTAGGAATAAGGTTGTGCCTGAGAAGCTCCATGATGAGAAACCAGAAAGATCTGCATGTGTGACACCAGAACCAGCAGCTGAACCAGAACCACAGGCAGAAGACACTGCAGACACCAAGCTTGTTACCAGAGTACCTGAGCAAAGTCATCAAGAGGGGGAGGAAGAGAGAGCCAGAGAAAGCTCTCATGCTCTCAACCCAGACACTGACACTCATATCCTGAACTCACCAAAGAGCAAGCGCCGCTCCTCACACAATTATACAAGATCAAAAGTCAAGCCTCATGCCACCAAAGACCCTGAAAAAGAGAACCGTCACCCTTTTGCCCTGTATGGTGCAGGAGAGAGGCAGACAGATATGGCTTCCAGGAAAACCCATAATGTTGGTCCTGCTGCATCAACTGCAGAGATCCATGAGTCAGCGTTGCGAGCAAAAACCAGGCGGGAGGTGGAAAAACAGATGAAGAGATTTGACAAACAAAGGGCCAGATCTGCTGACTTCGAAAAGAACAGAAATAAGATTGTCCCTGATTTTAACCCCTGGATGACGGAGTACATGCGCTGCTTCTCAGCTCGTTCTCGGTAGTACCGTTTTCTGAAATCCTTTGGAAATGTCAGTGACTCTAAACCTCTCaggctaaaaacacaaaacacatgatGACTGGCGCATCTGTTCAGCTTACTTGCCGTCTTCCAGAATGGGCCACAATGAATCAAACTCAAGGTTTTTTAGGGGTTTATTAACATCATGGATAGGTTGCATTTACTGGTACATATCAAACATGAAAGCACAATCCATTGATGCTGTAGGGCAAATCGTCAAATAATCACATGCCTTGCTGCATGGTTTTTGTAGGTCACATAGATTTATAGGTCATTTTATCTTTACATTTTAGCCAATTCTTTAAAAGTTTTCAGTAACTCAGACAATTATAGACATACAACGTGATGTATTGTAATGTTGTGTATTATCTACATTGTGTTAATAGTTAGGTTTaatgtaaagaaatgttttgtacttGAAATCATTTCCGCCAGCATGGATCAAATAATCTCACGTTGGCAGTTGATCTGTTCTATTAATATCTGCTTTCTTTGAAATGagatgtattatattttatttgtatattcaCACTAATGGTGAACTCCACGGTAATGTGTCAGAACAGTAATATCGTGACACAATGTAAAAAGTCACTGTTAACTGAAGCATGAAACTCAGCAAAATGACAAATCATTTTCATACACAGCAAAAGCAATCGCAGCTGTTCATCATCGAGAATAACTCTCATTCATTGTGATGTTATTTGGTTTTTAGTAGCACTCAGGTATTTcttgttgtattttatgtaatttattgagAAATGATGATATTGGGATGCTTTTACACTATTTATATAATGGTATTGAACTAATTCAGACTATTTTTAGTTCAGCATCTCTGACAACTGTACAGGTATCTTCGTATTGATTTATGGCATGTACTATGTGAATAGTGTTGGTTTTAGCGTAAGAATAATGAAGCCATAATGTATATGAGATGCATTATTGAATGAATATCCATTCCGCCGTCTGTTATGGAAAGAGTTTTGAAAAGTATTCAAAGTTTAAGTGTTTAGATTAACACCTTTTTTAAGGACAAGGTCTGATAGTATTTGTGTcagttaaagaaaaataaaactatttttcataACTGTA

Function

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0048666 neuron development biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0060548 negative regulation of cell death biological_process
GO:0007420 brain development biological_process
GO:0060296 regulation of cilium beat frequency involved in ciliary motility biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0030424 axon cellular_component
GO:0036064 ciliary basal body cellular_component
GO:0005814 centriole cellular_component
GO:0005819 spindle cellular_component
GO:0035869 ciliary transition zone cellular_component
GO:0005930 axoneme cellular_component

KEGG:

id description
K16454 CCSAP; centriole, cilia and spindle-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136303 lncRNA upstream 8977 8836716 ~ 8896909 (+) True G92066
TU136285 lncRNA upstream 114834 8789731 ~ 8791052 (+) True G92048
TU136284 lncRNA upstream 116685 8788997 ~ 8789201 (+) True G92047
TU136283 lncRNA upstream 118037 8786988 ~ 8787849 (+) True G92046
TU136282 lncRNA upstream 119022 8786595 ~ 8786864 (+) True G92045
TU136326 lncRNA downstream 19649 8929442 ~ 8965589 (+) True G92087
TU136353 lncRNA downstream 116179 9025972 ~ 9027909 (+) True fuom
TU136358 lncRNA downstream 140574 9050367 ~ 9097905 (+) False G92108
TU136364 lncRNA downstream 171895 9081688 ~ 9084026 (+) False spef1
TU136365 lncRNA downstream 171895 9081688 ~ 9084147 (+) False spef1
XM_043254970.1 mRNA upstream 875 8901550 ~ 8905011 (+) True acta1b
XM_043254958.1 mRNA upstream 5604 8892993 ~ 8900282 (+) True abcb10
XM_043254821.1 mRNA upstream 98359 8791156 ~ 8807527 (+) True pgbd5
XM_043256412.1 mRNA upstream 123118 8779155 ~ 8782768 (+) True agt
XM_043255697.1 mRNA upstream 165791 8739036 ~ 8740095 (+) True sf3b5
XM_043256099.1 mRNA downstream 30935 8940728 ~ 8942899 (+) True pdcd2
XM_043254704.1 mRNA downstream 37957 8947750 ~ 8950582 (+) True zgc:153169
XM_043255422.1 mRNA downstream 41102 8950895 ~ 8956697 (+) True rab1ab
XM_043255604.1 mRNA downstream 65296 8975089 ~ 9008344 (+) False sertad2b
XM_043255601.1 mRNA downstream 84585 8994378 ~ 9008344 (+) True sertad2b
TU136262 other upstream 165797 8739073 ~ 8740089 (+) False sf3b5
XR_006252358.1 other upstream 222834 8666268 ~ 8683052 (+) False pcnx2
TU135961 other upstream 595062 8306486 ~ 8310824 (+) True G91833
XR_006252298.1 other upstream 1024403 7858698 ~ 7881483 (+) False zswim8
TU135767 other upstream 1066945 7836190 ~ 7838941 (+) False chchd1
TU136388 other downstream 251768 9161561 ~ 9164114 (+) True zgc:153981
TU136946 other downstream 1326123 10235916 ~ 10249725 (+) False LOC122356813
XR_006252428.1 other downstream 1419351 10329144 ~ 10329279 (+) True LOC122357143
XR_006252423.1 other downstream 1509029 10418822 ~ 10419594 (+) False ly6pge
TU137252 other downstream 2055080 10964873 ~ 10968914 (+) True eif4ebp2

Expression Profile